JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMARCC1_chr3_47580269_47786893	0/0	a0003	1105	1	0	0	1	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	a0004	1105	1	1	0	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	a0005	1105	1	0	1	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC1_chr3_47580269_47786893	0/0	a0006	1105	1	1	0	0	0	0	copy fasta	SMARCC1	chr3	47580269	47786893
SMARCC2_chr12_56157359_56194483	1/1	a0001	1245	244	76	46	86	11	23	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	a0002	1245	1	0	1	0	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	a0003	1245	1	0	0	0	1	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	a0004	1245	1	0	0	0	0	1	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	a0005	1245	1	0	0	1	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	a0006	1245	1	0	1	0	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCC2_chr12_56157359_56194483	0/0	a0007	1245	1	0	0	1	0	0	copy fasta	SMARCC2	chr12	56157359	56194483
SMARCD1_chr12_50080342_50105707	1/1	a0001	515	364	98	69	149	14	32	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	a0002	515	1	0	1	0	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD1_chr12_50080342_50105707	0/0	a0003	515	1	0	0	1	0	0	copy fasta	SMARCD1	chr12	50080342	50105707
SMARCD2_chr17_63827081_63847685	1/1	a0001	531	344	81	64	143	16	38	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	a0002	531	4	4	0	0	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	a0003	531	3	3	0	0	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	a0004	531	2	0	0	2	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD2_chr17_63827081_63847685	0/0	a0005	531	1	0	0	1	0	0	copy fasta	SMARCD2	chr17	63827081	63847685
SMARCD3_chr7_151233780_151253694	0/0	a0001	483	380	94	70	156	16	44	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCD3_chr7_151233780_151253694	0/0	a0002	483	1	0	0	1	0	0	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCD3_chr7_151233780_151253694	0/0	a0003	483	1	0	0	1	0	0	copy fasta	SMARCD3	chr7	151233780	151253694
SMARCE1_chr17_40619962_40652818	1/1	a0001	411	399	87	63	197	18	32	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	a0002	57	1	0	0	1	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	a0003	411	1	1	0	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMARCE1_chr17_40619962_40652818	0/0	a0004	410	1	0	1	0	0	0	copy fasta	SMARCE1	chr17	40619962	40652818
SMC1A_chrX_53369149_53427654	1/1	a0001	1233	211	59	34	85	9	22	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	a0002	1233	1	0	1	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	a0003	883	1	1	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1B_chr22_45339063_45418599	1/0	a0001	1235	147	69	15	50	0	12	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0002	1235	99	5	28	52	3	11	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0003	1235	53	1	5	42	2	3	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/1	a0004	1235	25	8	9	0	2	5	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0005	1235	12	0	7	1	1	3	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0006	1235	6	0	0	6	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0007	1235	4	4	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0008	1235	3	2	1	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0009	1235	2	2	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0010	1235	2	2	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0011	1235	2	0	0	2	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0012	1235	1	0	0	0	0	1	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0013	1235	1	1	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0014	1235	1	0	0	0	0	1	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0015	1235	1	0	1	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	a0016	1235	1	0	0	1	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC2_chr9_104089309_104146419	1/1	a0001	1197	265	79	58	71	12	43	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	a0002	1197	4	1	2	0	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	a0003	1197	4	4	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	a0004	1197	2	0	2	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	a0005	1197	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419