JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMG1_chr16_18799860_18931408	0/0	a0003	3661	13	0	0	13	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0004	3661	2	2	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0005	3661	2	0	0	2	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0006	3661	2	0	1	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0007	3661	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0008	3661	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0009	3661	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0010	3661	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0011	3661	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0012	3661	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0013	3661	1	0	0	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0014	3661	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG5_chr1_156244224_156287825	1/1	a0001	1016	361	83	69	154	14	39	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	a0002	1016	2	2	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	a0003	1016	1	0	0	0	0	1	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	a0004	1016	1	0	1	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	a0005	1016	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	a0006	1016	1	1	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	a0007	1016	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG6_chr17_2054843_2308785	0/0	a0001	1419	78	11	13	38	1	15	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0002	1419	68	14	9	24	5	16	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/1	a0003	1419	52	1	23	16	2	9	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0004	1419	18	17	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	1/0	a0005	1419	14	11	2	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0006	1419	14	0	0	7	1	6	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0007	1419	8	8	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0008	1419	3	1	1	0	1	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0009	1419	3	0	0	3	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0010	1419	3	3	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0011	1419	3	1	2	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0012	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0013	1419	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0014	1419	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0015	1419	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0016	1419	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0017	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0018	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0019	1419	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0020	1419	1	0	0	1	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0021	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0022	1419	1	0	1	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0023	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0024	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG6_chr17_2054843_2308785	0/0	a0025	1419	1	1	0	0	0	0	copy fasta	SMG6	chr17	2054843	2308785
SMG7_chr1_183467499_183559191	1/1	a0001	1187	229	60	42	94	10	21	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0002	1187	69	20	15	25	4	5	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0003	1187	44	0	4	38	0	2	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0004	1188	8	8	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0005	1187	3	0	0	3	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0006	1187	2	0	2	0	0	0	copy fasta	SMG7	chr1	183467499	183559191