JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SOX18_chr20_64042582_64054639	0/0	a0002	384	2	0	0	2	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	a0003	384	1	0	0	0	0	1	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	a0004	384	1	0	0	0	1	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	a0005	384	1	0	0	1	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX1_chr13_112062149_112076706	1/1	a0001	391	327	83	56	141	16	29	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	a0002	391	43	10	5	22	0	6	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	a0003	391	7	0	0	4	0	3	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	a0004	393	5	2	1	0	0	2	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	a0005	389	4	3	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	a0006	391	1	0	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	a0007	391	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX21_chr13_94704622_94717545	1/1	a0001	276	435	100	74	195	16	48	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	a0002	269	1	0	0	1	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX2_chr3_181706925_181719436	1/1	a0001	317	411	94	82	186	12	35	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	a0002	317	1	0	0	0	0	1	copy fasta	SOX2	chr3	181706925	181719436
SOX30_chr5_157620679_157657438	1/1	a0001	753	330	72	56	159	14	27	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0002	753	30	0	3	23	0	4	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0003	753	9	9	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0004	753	5	3	2	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0005	753	4	0	1	0	0	3	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0006	753	3	3	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0007	753	3	0	0	3	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0008	753	2	0	2	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0009	753	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0010	753	1	0	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0011	753	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0012	753	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0013	753	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0014	753	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0015	753	1	0	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	a0016	753	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX3_chrX_140497985_140510069	1/1	a0001	446	318	62	59	154	11	30	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0002	446	9	9	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0003	446	6	6	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0004	446	2	2	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0005	446	1	0	1	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0006	376	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0007	439	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	a0008	109	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX4_chr6_21588751_21603619	1/1	a0001	474	341	84	58	148	12	37	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0002	475	5	4	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0003	474	2	0	1	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0004	475	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0005	474	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0006	474	1	0	0	0	0	1	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0007	474	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0008	474	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0009	474	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0010	474	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	a0011	474	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619