JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SP110_chr2_230160186_230224984	0/0	a0016	713	4	3	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0017	713	4	0	3	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0018	713	3	0	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0019	713	3	0	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0020	713	3	0	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0021	713	3	0	2	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0022	713	2	0	0	1	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0023	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0024	713	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0025	713	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0026	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0027	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0028	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0029	713	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0030	713	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0031	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	1/0	a0032	713	1	0	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0033	713	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0034	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0035	713	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	a0036	713	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP140L_chr2_230322193_230408732	1/1	a0001	580	158	29	27	74	7	19	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0002	580	72	35	19	11	5	2	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0003	580	54	10	6	25	2	11	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0004	580	17	2	3	9	2	1	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0005	580	12	0	1	8	2	1	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0006	580	5	0	4	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0007	580	4	4	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0008	580	4	4	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0009	580	3	3	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0010	580	2	0	0	0	0	2	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0011	480	2	0	0	0	0	2	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0012	580	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0013	580	1	0	0	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	a0014	580	1	0	0	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140_chr2_230220736_230318215	0/1	a0001	867	269	61	42	124	5	36	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0002	867	35	2	9	18	3	3	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0003	867	25	2	15	0	5	3	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0004	867	16	14	0	1	0	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	1/0	a0005	867	9	0	2	1	4	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0006	867	4	4	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0007	867	3	2	0	0	1	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0008	867	3	0	1	2	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0009	867	2	2	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0010	867	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0011	867	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0012	867	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	a0013	867	1	0	1	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP1_chr12_53375176_53421446	1/1	a0001	785	320	78	65	121	16	38	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	a0002	785	2	0	0	2	0	0	copy fasta	SP1	chr12	53375176	53421446