JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA2_chr20_49898391_49920529	0/0	a0004	520	2	0	0	0	0	2	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0005	520	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0006	520	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0007	520	1	0	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0008	520	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0009	520	1	0	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0010	520	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0011	520	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	a0012	520	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA31A1_chr9_39350669_39366962	0/1	a0001	1347	215	37	40	103	5	29	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0002	1347	100	9	17	66	3	5	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0003	1347	35	1	9	21	0	4	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0004	1347	10	0	9	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0005	1347	6	0	0	6	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	1/0	a0006	1347	4	2	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0007	1347	4	0	3	0	1	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0008	1347	3	3	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0009	1347	3	2	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0010	1347	2	1	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0011	1347	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0012	1347	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0013	1347	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0014	1347	2	2	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0015	1347	2	1	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0016	1347	2	0	2	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0017	1347	2	0	0	2	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0018	1347	2	0	0	2	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0019	1347	2	0	0	2	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0020	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0021	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0022	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0023	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0024	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0025	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0026	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0027	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0028	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0029	1347	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0030	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0031	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0032	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0033	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0034	1347	1	0	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0035	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0036	1347	1	0	1	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0037	1347	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0038	1347	1	0	0	0	1	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0039	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0040	1347	1	0	0	1	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0041	1347	1	1	0	0	0	0	copy fasta	SPATA31A1	chr9	39350669	39366962