JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31A1_chr9_39350669_39366962	0/0	a0042	1347	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A1_chr9_39350669_39366962	0/0	a0043	1347	1	0	0	0	0	1	copy fasta	SPATA31A1	chr9	39350669	39366962
SPATA31A3_chr9_66981304_66997550	0/0	a0001	1347	86	6	5	68	2	5	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0002	1347	73	12	22	25	5	9	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0003	1347	71	6	17	36	1	11	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0004	1347	42	3	7	22	2	8	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0005	1347	18	7	7	0	1	3	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0006	1347	16	9	5	1	1	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0007	1347	12	11	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0008	1347	10	0	5	0	3	2	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0009	1347	9	9	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0010	1347	5	5	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0011	1347	5	5	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0012	1347	5	0	0	5	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0013	1347	4	0	0	0	0	4	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0014	1347	3	3	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0015	1347	3	0	0	3	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0016	1347	3	0	1	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0017	1347	2	1	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0018	1347	2	0	1	0	1	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0019	1347	2	2	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0020	1347	2	0	2	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0021	1347	2	0	0	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0022	1347	2	0	0	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0023	1347	2	0	2	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0024	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0025	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0026	1347	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0027	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0028	1347	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0029	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0030	1347	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0031	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0032	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0033	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0034	1347	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0035	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0036	1347	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0037	1347	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0038	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0039	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0040	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0041	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0042	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0043	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0044	1347	1	0	0	0	0	1	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0045	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0046	1347	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0047	1347	1	0	0	0	0	1	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	a0048	1347	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550