JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31C2_chr9_88124305_88143475	0/0	a0023	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0024	1134	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0025	1134	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0026	1134	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0027	1134	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0028	1134	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0029	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0030	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0031	1134	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0032	1134	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0033	1152	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0034	1146	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0035	1134	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0036	1134	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0037	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0038	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0039	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0040	1134	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0041	1134	1	1	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0042	1053	1	0	0	1	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0043	1053	1	0	0	0	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31D1_chr9_81983772_82000253	1/1	a0001	1576	316	59	61	147	12	35	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0002	1576	11	0	4	7	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0003	1576	9	9	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0004	1576	6	6	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0005	1576	4	4	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0006	1576	3	3	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0007	1576	3	0	0	0	0	3	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0008	1576	3	3	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0009	1576	3	0	1	0	2	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0010	1576	2	2	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0011	1576	2	0	1	0	1	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0012	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0013	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0014	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0015	1576	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0016	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0017	1576	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0018	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0019	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0020	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0021	1576	1	0	0	0	0	1	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0022	1576	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0023	1576	1	0	0	0	0	1	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0024	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0025	1576	1	0	1	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0026	1576	1	0	1	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0027	1576	1	0	0	0	1	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0028	1576	1	0	1	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0029	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253