Joint Open Genome and Omics Platform (JoGo)

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geneid	389763
ensemblid	ENSG00000214929.4
hgncid	37283
symbol	SPATA31D1
name	SPATA31 subfamily D member 1
refseq_nuc	NM_001001670.3
refseq_prot	NP_001001670.1
ensembl_nuc	ENST00000344803.3
ensembl_prot	ENSP00000341988.2
mane_status	MANE Select
chr	chr9
start	81988772
end	81995253
strand	+
ver	v1.2
region	chr9:81988772-81995253
region5000	chr9:81983772-82000253
regionname0	SPATA31D1_chr9_81988772_81995253
regionname5000	SPATA31D1_chr9_81983772_82000253

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	1576	316	59	61	147	12	35	112	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0002	0/0	1576	11	0	4	7	0	0	6	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0003	0/0	1576	9	9	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0004	0/0	1576	6	6	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0005	0/0	1576	4	4	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0006	0/0	1576	3	3	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0007	0/0	1576	3	0	0	0	0	3	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0008	0/0	1576	3	3	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0009	0/0	1576	3	0	1	0	2	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0010	0/0	1576	2	2	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0011	0/0	1576	2	0	1	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0012	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0013	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0014	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0015	0/0	1576	1	0	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0016	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0017	0/0	1576	1	0	0	1	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0018	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0019	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0020	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0021	0/0	1576	1	0	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0022	0/0	1576	1	0	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0023	0/0	1576	1	0	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0024	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0025	0/0	1576	1	0	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0026	0/0	1576	1	0	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0027	0/0	1576	1	0	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0028	0/0	1576	1	0	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0029	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0030	0/0	1576	1	1	0	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0031	0/0	1576	1	0	0	1	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/1	4731	157	37	21	76	6	16	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0002	1/0	4731	132	4	38	67	5	17	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0003	0/0	4731	11	0	4	7	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0004	0/0	4731	9	9	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0005	0/0	4731	9	5	2	2	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0006	0/0	4731	7	7	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0007	0/0	4731	6	6	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0008	0/0	4731	4	4	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0009	0/0	4731	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0010	0/0	4731	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0011	0/0	4731	3	0	0	0	0	3	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0012	0/0	4731	3	0	1	0	2	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0013	0/0	4731	2	0	1	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0014	0/0	4731	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0015	0/0	4731	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0016	0/0	4731	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0017	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0018	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0019	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0020	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0021	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0022	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0023	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0024	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0025	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0026	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0027	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0028	0/0	4731	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0029	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0030	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0031	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0032	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0033	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0034	0/0	4731	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0035	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0036	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0037	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0038	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0039	0/0	4731	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0040	0/0	4731	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0041	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0042	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
c0043	0/0	4731	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	100	382	96	70	158	16	40	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	242	35	40	126	8	31	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0002	0/0	80	40	7	22	7	4	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0003	0/0	16	0	15	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0004	0/0	16	12	1	2	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0005	0/0	5	0	0	5	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0006	0/0	4	4	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0007	0/0	4	3	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0008	0/0	3	2	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0009	0/0	2	0	1	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0010	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0011	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0012	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0013	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0014	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0015	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0016	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0017	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0018	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
g0019	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/1	4731	157	37	21	76	6	16	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0002	1/0	4731	132	4	38	67	5	17	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0005	0/0	4731	9	5	2	2	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0006	0/0	4731	7	7	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0015	0/0	4731	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0016	0/0	4731	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0017	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0020	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0024	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0034	0/0	4731	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0035	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0037	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0042	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0002c0003	0/0	4731	11	0	4	7	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0003c0004	0/0	4731	9	9	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0004c0007	0/0	4731	6	6	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0005c0008	0/0	4731	4	4	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0006c0009	0/0	4731	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0007c0011	0/0	4731	3	0	0	0	0	3	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0008c0010	0/0	4731	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0009c0012	0/0	4731	3	0	1	0	2	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0010c0014	0/0	4731	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0011c0013	0/0	4731	2	0	1	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0012c0019	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0013c0025	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0014c0026	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0015c0036	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0016c0023	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0017c0027	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0018c0029	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0019c0032	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0020c0031	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0021c0030	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0022c0033	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0023c0041	0/0	4731	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0024c0038	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0025c0028	0/0	4731	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0026c0039	0/0	4731	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0027c0040	0/0	4731	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0028c0043	0/0	4731	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0029c0022	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0030c0021	0/0	4731	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0031c0018	0/0	4731	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	4830	157	37	21	76	6	16	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0002t0001	1/0	4830	132	4	38	67	5	17	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0005t0001	0/0	4830	9	5	2	2	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0006t0001	0/0	4830	7	7	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0015t0001	0/0	4830	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0016t0001	0/0	4830	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0017t0001	0/0	4830	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0020t0001	0/0	4830	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0024t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0034t0001	0/0	4830	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0035t0001	0/0	4830	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0037t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0001c0042t0001	0/0	4830	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0002c0003t0001	0/0	4830	11	0	4	7	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0003c0004t0001	0/0	4830	9	9	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0004c0007t0001	0/0	4830	6	6	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0005c0008t0001	0/0	4830	4	4	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0006c0009t0001	0/0	4830	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0007c0011t0001	0/0	4830	3	0	0	0	0	3	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0008c0010t0001	0/0	4830	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0009c0012t0001	0/0	4830	3	0	1	0	2	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0010c0014t0001	0/0	4830	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0011c0013t0001	0/0	4830	2	0	1	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0012c0019t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0013c0025t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0014c0026t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0015c0036t0001	0/0	4830	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0016c0023t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0017c0027t0001	0/0	4830	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0018c0029t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0019c0032t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0020c0031t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0021c0030t0001	0/0	4830	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0022c0033t0001	0/0	4830	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0023c0041t0001	0/0	4830	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0024c0038t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0025c0028t0001	0/0	4830	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0026c0039t0001	0/0	4830	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0027c0040t0001	0/0	4830	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0028c0043t0001	0/0	4830	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0029c0022t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0030c0021t0001	0/0	4830	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253
a0031c0018t0001	0/0	4830	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	copy fasta	chr9	81983772	82000253

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	124	25	13	66	4	15	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0001t0001g0002	0/0	26	10	5	9	2	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0001t0001g0008	0/0	3	2	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0001t0001g0009	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0001t0001g0010	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0001t0001g0015	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0001	1/0	88	4	21	49	2	11	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0002	0/0	18	0	1	11	3	3	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0003	0/0	16	0	15	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0005	0/0	5	0	0	5	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0011	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0013	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0014	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0016	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0002t0001g0018	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0005t0001g0004	0/0	6	3	1	2	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0005t0001g0007	0/0	3	2	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0006t0001g0004	0/0	7	7	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0015t0001g0002	0/0	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0016t0001g0002	0/0	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0017t0001g0001	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0020t0001g0001	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0024t0001g0001	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0034t0001g0004	0/0	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0035t0001g0001	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0037t0001g0004	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0001c0042t0001g0002	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0002c0003t0001g0001	0/0	10	0	3	7	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0002c0003t0001g0019	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0003c0004t0001g0002	0/0	9	9	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0004c0007t0001g0002	0/0	6	6	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0005c0008t0001g0006	0/0	4	4	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0006c0009t0001g0002	0/0	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0007c0011t0001g0001	0/0	2	0	0	0	0	2	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0007c0011t0001g0002	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0008c0010t0001g0002	0/0	3	3	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0009c0012t0001g0002	0/0	3	0	1	0	2	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0010c0014t0001g0001	0/0	2	2	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0011c0013t0001g0001	0/0	2	0	1	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0012c0019t0001g0002	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0013c0025t0001g0001	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0014c0026t0001g0002	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0015c0036t0001g0001	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0016c0023t0001g0004	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0017c0027t0001g0002	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0018c0029t0001g0002	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0019c0032t0001g0002	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0020c0031t0001g0001	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0021c0030t0001g0009	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0022c0033t0001g0001	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0023c0041t0001g0001	0/0	1	0	0	0	0	1	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0024c0038t0001g0007	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0025c0028t0001g0012	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0026c0039t0001g0001	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0027c0040t0001g0001	0/0	1	0	0	0	1	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0028c0043t0001g0001	0/0	1	0	1	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0029c0022t0001g0002	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0030c0021t0001g0001	0/0	1	1	0	0	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
a0031c0018t0001g0001	0/0	1	0	0	1	0	0	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0002	t0001	g0002	EUR	GBR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00099	hp2	a0001	c0001	t0001	g0002	EUR	GBR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00140	hp1	a0001	c0034	t0001	g0004	EUR	GBR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00280	hp2	a0001	c0002	t0001	g0001	EUR	FIN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00323	hp1	a0009	c0012	t0001	g0002	EUR	FIN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00323	hp2	a0001	c0002	t0001	g0002	EUR	FIN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00408	hp1	a0001	c0001	t0001	g0002	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00408	hp2	a0015	c0036	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00438	hp1	a0001	c0002	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00544	hp1	a0001	c0002	t0001	g0005	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00558	hp1	a0001	c0002	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00558	hp2	a0001	c0002	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00609	hp1	a0001	c0002	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00609	hp2	a0001	c0001	t0001	g0002	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00621	hp1	a0001	c0002	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00642	hp1	a0001	c0002	t0001	g0016	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00642	hp2	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00673	hp2	a0001	c0002	t0001	g0001	EAS	CHS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00733	hp1	a0001	c0005	t0001	g0007	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00733	hp2	a0028	c0043	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00735	hp1	a0001	c0005	t0001	g0004	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00735	hp2	a0001	c0001	t0001	g0015	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00738	hp1	a0001	c0002	t0001	g0003	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00738	hp2	a0001	c0002	t0001	g0002	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00741	hp1	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG00741	hp2	a0011	c0013	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01081	hp1	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01081	hp2	a0001	c0002	t0001	g0003	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01099	hp1	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01099	hp2	a0001	c0001	t0001	g0009	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01109	hp1	a0001	c0002	t0001	g0003	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01109	hp2	a0001	c0001	t0001	g0002	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01167	hp1	a0001	c0002	t0001	g0003	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01167	hp2	a0026	c0039	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01168	hp1	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01168	hp2	a0001	c0001	t0001	g0008	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01175	hp1	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01192	hp1	a0001	c0002	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01192	hp2	a0001	c0001	t0001	g0002	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01243	hp1	a0025	c0028	t0001	g0012	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01243	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01255	hp2	a0009	c0012	t0001	g0002	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01256	hp1	a0001	c0002	t0001	g0003	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01256	hp2	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01257	hp1	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01257	hp2	a0001	c0001	t0001	g0002	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01258	hp1	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01258	hp2	a0001	c0001	t0001	g0002	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01346	hp2	a0001	c0002	t0001	g0003	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01358	hp1	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01358	hp2	a0001	c0002	t0001	g0003	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01361	hp2	a0001	c0002	t0001	g0003	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01433	hp1	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01433	hp2	a0002	c0003	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01496	hp1	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01496	hp2	a0001	c0002	t0001	g0003	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01515	hp1	a0009	c0012	t0001	g0002	EUR	IBS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01515	hp2	a0001	c0001	t0001	g0002	EUR	IBS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01516	hp2	a0001	c0002	t0001	g0002	EUR	IBS	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01884	hp1	a0013	c0025	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01884	hp2	a0004	c0007	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01891	hp1	a0012	c0019	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01928	hp1	a0001	c0002	t0001	g0003	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01928	hp2	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01934	hp2	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01943	hp1	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01943	hp2	a0001	c0002	t0001	g0003	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01952	hp2	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01975	hp1	a0002	c0003	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01975	hp2	a0001	c0002	t0001	g0003	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01981	hp1	a0001	c0002	t0001	g0003	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01993	hp1	a0001	c0002	t0001	g0003	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01993	hp2	a0002	c0003	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02027	hp2	a0001	c0002	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02040	hp2	a0001	c0017	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02055	hp1	a0001	c0006	t0001	g0004	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02055	hp2	a0001	c0001	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02056	hp1	a0001	c0005	t0001	g0004	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02071	hp2	a0001	c0002	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02074	hp2	a0001	c0002	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02083	hp2	a0001	c0002	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02145	hp1	a0001	c0002	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02145	hp2	a0001	c0002	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02155	hp1	a0022	c0033	t0001	g0001	EAS	CDX	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02155	hp2	a0001	c0002	t0001	g0002	EAS	CDX	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02165	hp1	a0001	c0002	t0001	g0001	EAS	CDX	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02258	hp2	a0001	c0001	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02273	hp1	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02273	hp2	a0002	c0003	t0001	g0019	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02280	hp1	a0001	c0005	t0001	g0004	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02280	hp2	a0001	c0037	t0001	g0004	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02293	hp2	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02300	hp1	a0001	c0002	t0001	g0003	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02300	hp2	a0001	c0002	t0001	g0001	AMR	PEL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02451	hp1	a0004	c0007	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02451	hp2	a0001	c0001	t0001	g0008	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02523	hp1	a0002	c0003	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02572	hp1	a0003	c0004	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02572	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02602	hp1	a0021	c0030	t0001	g0009	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02602	hp2	a0001	c0002	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02615	hp1	a0001	c0006	t0001	g0004	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02622	hp2	a0001	c0015	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02630	hp1	a0024	c0038	t0001	g0007	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02647	hp1	a0019	c0032	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02647	hp2	a0003	c0004	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02698	hp1	a0001	c0020	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02698	hp2	a0007	c0011	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02717	hp1	a0003	c0004	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02717	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02723	hp1	a0001	c0001	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02723	hp2	a0003	c0004	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02735	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02809	hp1	a0001	c0001	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02818	hp1	a0003	c0004	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02818	hp2	a0001	c0001	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02886	hp2	a0001	c0005	t0001	g0007	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02895	hp1	a0001	c0001	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02895	hp2	a0008	c0010	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02896	hp1	a0001	c0005	t0001	g0007	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02897	hp1	a0008	c0010	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02897	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02922	hp2	a0016	c0023	t0001	g0004	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02965	hp1	a0001	c0001	t0001	g0002	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02965	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02970	hp1	a0001	c0002	t0001	g0001	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02970	hp2	a0005	c0008	t0001	g0006	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02976	hp1	a0004	c0007	t0001	g0002	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03041	hp2	a0004	c0007	t0001	g0002	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03098	hp1	a0001	c0015	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03098	hp2	a0001	c0006	t0001	g0004	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03195	hp1	a0001	c0006	t0001	g0004	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03209	hp2	a0004	c0007	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03225	hp1	a0001	c0016	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03225	hp2	a0006	c0009	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03239	hp1	a0023	c0041	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03453	hp1	a0018	c0029	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03453	hp2	a0001	c0005	t0001	g0004	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03486	hp1	a0004	c0007	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03486	hp2	a0003	c0004	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03490	hp1	a0001	c0002	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03492	hp2	a0001	c0002	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03516	hp1	a0005	c0008	t0001	g0006	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03516	hp2	a0001	c0001	t0001	g0002	AFR	ESN	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03540	hp1	a0005	c0008	t0001	g0006	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03579	hp1	a0029	c0022	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03579	hp2	a0001	c0002	t0001	g0001	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03654	hp2	a0001	c0002	t0001	g0002	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03669	hp2	a0001	c0035	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03688	hp1	a0001	c0002	t0001	g0001	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03704	hp2	a0001	c0002	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03831	hp1	a0001	c0002	t0001	g0001	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03831	hp2	a0001	c0002	t0001	g0003	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03834	hp1	a0001	c0001	t0001	g0010	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03834	hp2	a0007	c0011	t0001	g0002	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03927	hp1	a0001	c0002	t0001	g0001	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03942	hp2	a0001	c0002	t0001	g0002	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04184	hp1	a0001	c0002	t0001	g0018	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04199	hp1	a0001	c0002	t0001	g0001	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04199	hp2	a0001	c0002	t0001	g0001	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04204	hp2	a0001	c0002	t0001	g0002	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04228	hp1	a0001	c0002	t0001	g0013	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG04228	hp2	a0001	c0002	t0001	g0001	SAS	STU	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18522	hp1	a0010	c0014	t0001	g0001	AFR	YRI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18522	hp2	a0001	c0001	t0001	g0001	AFR	YRI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18612	hp1	a0001	c0002	t0001	g0001	EAS	CHB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18747	hp2	a0001	c0002	t0001	g0001	EAS	CHB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18906	hp1	a0001	c0001	t0001	g0002	AFR	YRI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18906	hp2	a0006	c0009	t0001	g0002	AFR	YRI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18940	hp2	a0001	c0002	t0001	g0014	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18941	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18942	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18943	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18943	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18945	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18946	hp1	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18947	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18950	hp1	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18951	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18951	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18953	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18953	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18954	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18954	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18956	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18957	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18960	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18960	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18961	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18963	hp1	a0001	c0001	t0001	g0017	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18964	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18965	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18965	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18966	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18966	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18968	hp1	a0001	c0005	t0001	g0004	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18968	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18969	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18971	hp2	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18972	hp1	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18972	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18973	hp1	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18973	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18977	hp1	a0017	c0027	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18977	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18979	hp2	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18980	hp1	a0001	c0002	t0001	g0011	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18980	hp2	a0002	c0003	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18981	hp1	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18981	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18983	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18983	hp2	a0001	c0002	t0001	g0005	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18985	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18985	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18988	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18988	hp2	a0002	c0003	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18989	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18989	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18990	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18991	hp1	a0002	c0003	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18994	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18995	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18995	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18998	hp1	a0002	c0003	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA18998	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19000	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19004	hp2	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19011	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19012	hp1	a0001	c0002	t0001	g0005	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19012	hp2	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19030	hp1	a0020	c0031	t0001	g0001	AFR	LWK	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19030	hp2	a0001	c0006	t0001	g0004	AFR	LWK	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19043	hp1	a0003	c0004	t0001	g0002	AFR	LWK	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19043	hp2	a0003	c0004	t0001	g0002	AFR	LWK	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19054	hp1	a0001	c0002	t0001	g0005	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19056	hp2	a0002	c0003	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19057	hp1	a0031	c0018	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19062	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19062	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19064	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19065	hp2	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19066	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19068	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19068	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19070	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19075	hp1	a0001	c0002	t0001	g0005	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19075	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19077	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19079	hp2	a0001	c0002	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19081	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19082	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19084	hp2	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19089	hp1	a0002	c0003	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19089	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19090	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19091	hp2	a0001	c0042	t0001	g0002	EAS	JPT	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19240	hp1	a0001	c0005	t0001	g0004	AFR	YRI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA19240	hp2	a0003	c0004	t0001	g0002	AFR	YRI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20129	hp1	a0010	c0014	t0001	g0001	AFR	ASW	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20752	hp2	a0011	c0013	t0001	g0001	EUR	TSI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20805	hp1	a0027	c0040	t0001	g0001	EUR	TSI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20805	hp2	a0001	c0002	t0001	g0001	EUR	TSI	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20905	hp1	a0001	c0002	t0001	g0001	SAS	GIH	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20905	hp2	a0007	c0011	t0001	g0001	SAS	GIH	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01123	hp1	a0001	c0001	t0001	g0002	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG01123	hp2	a0001	c0002	t0001	g0001	AMR	CLM	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02109	hp1	a0001	c0001	t0001	g0008	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02109	hp2	a0014	c0026	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02486	hp1	a0005	c0008	t0001	g0006	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02486	hp2	a0001	c0024	t0001	g0001	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02559	hp1	a0001	c0006	t0001	g0004	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG02559	hp2	a0006	c0009	t0001	g0002	AFR	ACB	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03471	hp1	a0008	c0010	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG03471	hp2	a0001	c0016	t0001	g0002	AFR	MSL	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
HG06807	hp2	a0001	c0001	t0001	g0001	AFR	USA	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20300	hp1	a0030	c0021	t0001	g0001	AFR	USA	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA20300	hp2	a0001	c0006	t0001	g0004	AFR	USA	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA21309	hp1	a0001	c0001	t0001	g0002	AFR	LWK	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253
homoSapiens_grch38	hp1	a0001	c0002	t0001	g0001	REF	REF	SPATA31D1_chr9_81983772_82000253	SPATA31D1	chr9	81983772	82000253

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr9:81991008	C C	A A	1	a0031 a0031	1	NA19057.hp1 NA19057.hp1	missense_variant	MODERATE	c.538C>A c.538C>A	p.Pro180Thr p.Pro180Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	585/4830	538/4731	180/1576	chr9	81991008
chr9:81991047	T T	C C	1	a0012 a0012	1	HG01891.hp1 HG01891.hp1	missense_variant	MODERATE	c.577T>C c.577T>C	p.Ser193Pro p.Ser193Pro	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	624/4830	577/4731	193/1576	chr9	81991047
chr9:81991056	C C	A A	1	a0011 a0011	2	HG00741.hp2 NA20752.hp2 HG00741.hp2 NA20752.hp2	missense_variant	MODERATE	c.586C>A c.586C>A	p.Pro196Thr p.Pro196Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	633/4830	586/4731	196/1576	chr9	81991056
chr9:81991342	C C	G G	1	a0006 a0006	3	HG02559.hp2 HG03225.hp2 NA18906.hp2 HG02559.hp2 HG03225.hp2 NA18906.hp2	missense_variant	MODERATE	c.872C>G c.872C>G	p.Ser291Cys p.Ser291Cys	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	919/4830	872/4731	291/1576	chr9	81991342
chr9:81991636	T T	C C	1	a0030 a0030	1	NA20300.hp1 NA20300.hp1	missense_variant	MODERATE	c.1166T>C c.1166T>C	p.Phe389Ser p.Phe389Ser	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1213/4830	1166/4731	389/1576	chr9	81991636
chr9:81991732	A A	G G	1	a0009 a0009	3	HG00323.hp1 HG01255.hp2 HG01515.hp1 HG00323.hp1 HG01255.hp2 HG01515.hp1	missense_variant	MODERATE	c.1262A>G c.1262A>G	p.Lys421Arg p.Lys421Arg	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1309/4830	1262/4731	421/1576	chr9	81991732
chr9:81991789	A A	C C	1	a0002 a0002	11	HG01433.hp2 HG01975.hp1 HG01993.hp2 others(8): Show HG01433.hp2 HG01975.hp1 HG01993.hp2 HG02273.hp2 HG02523.hp1 NA18980.hp2 NA18988.hp2 NA18991.hp1 NA18998.hp1 NA19056.hp2 NA19089.hp1	missense_variant	MODERATE	c.1319A>C c.1319A>C	p.Lys440Thr p.Lys440Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1366/4830	1319/4731	440/1576	chr9	81991789
chr9:81991944	T T	C C	2	a0004 a0029 a0004 a0029	7	HG01884.hp2 HG02451.hp1 HG02976.hp1 others(4): Show HG01884.hp2 HG02451.hp1 HG02976.hp1 HG03041.hp2 HG03209.hp2 HG03486.hp1 HG03579.hp1	missense_variant	MODERATE	c.1474T>C c.1474T>C	p.Phe492Leu p.Phe492Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1521/4830	1474/4731	492/1576	chr9	81991944
chr9:81992236	G G	C C	1	a0010 a0010	2	NA18522.hp1 NA20129.hp1 NA18522.hp1 NA20129.hp1	missense_variant	MODERATE	c.1766G>C c.1766G>C	p.Arg589Pro p.Arg589Pro	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1813/4830	1766/4731	589/1576	chr9	81992236
chr9:81992431	C C	G G	1	a0028 a0028	1	HG00733.hp2 HG00733.hp2	missense_variant	MODERATE	c.1961C>G c.1961C>G	p.Ala654Gly p.Ala654Gly	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2008/4830	1961/4731	654/1576	chr9	81992431
chr9:81992433	C C	A A	1	a0028 a0028	1	HG00733.hp2 HG00733.hp2	missense_variant	MODERATE	c.1963C>A c.1963C>A	p.Pro655Thr p.Pro655Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2010/4830	1963/4731	655/1576	chr9	81992433
chr9:81992443	A A	T T	1	a0006 a0006	3	HG02559.hp2 HG03225.hp2 NA18906.hp2 HG02559.hp2 HG03225.hp2 NA18906.hp2	missense_variant	MODERATE	c.1973A>T c.1973A>T	p.Glu658Val p.Glu658Val	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2020/4830	1973/4731	658/1576	chr9	81992443
chr9:81992466	G G	C C	1	a0013 a0013	1	HG01884.hp1 HG01884.hp1	missense_variant	MODERATE	c.1996G>C c.1996G>C	p.Val666Leu p.Val666Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2043/4830	1996/4731	666/1576	chr9	81992466
chr9:81992489	T T	G G	1	a0008 a0008	3	HG02895.hp2 HG02897.hp1 HG03471.hp1 HG02895.hp2 HG02897.hp1 HG03471.hp1	missense_variant	MODERATE	c.2019T>G c.2019T>G	p.Ile673Met p.Ile673Met	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2066/4830	2019/4731	673/1576	chr9	81992489
chr9:81992493	G G	A A	1	a0006 a0006	3	HG02559.hp2 HG03225.hp2 NA18906.hp2 HG02559.hp2 HG03225.hp2 NA18906.hp2	missense_variant	MODERATE	c.2023G>A c.2023G>A	p.Gly675Arg p.Gly675Arg	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2070/4830	2023/4731	675/1576	chr9	81992493
chr9:81992648	G G	C C	1	a0014 a0014	1	HG02109.hp2 HG02109.hp2	missense_variant	MODERATE	c.2178G>C c.2178G>C	p.Glu726Asp p.Glu726Asp	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2225/4830	2178/4731	726/1576	chr9	81992648
chr9:81992651	A A	C C	1	a0014 a0014	1	HG02109.hp2 HG02109.hp2	missense_variant	MODERATE	c.2181A>C c.2181A>C	p.Arg727Ser p.Arg727Ser	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2228/4830	2181/4731	727/1576	chr9	81992651
chr9:81992904	C C	G G	1	a0027 a0027	1	NA20805.hp1 NA20805.hp1	missense_variant	MODERATE	c.2434C>G c.2434C>G	p.Leu812Val p.Leu812Val	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2481/4830	2434/4731	812/1576	chr9	81992904
chr9:81992946	C C	G G	1	a0026 a0026	1	HG01167.hp2 HG01167.hp2	missense_variant	MODERATE	c.2476C>G c.2476C>G	p.Leu826Val p.Leu826Val	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2523/4830	2476/4731	826/1576	chr9	81992946
chr9:81992988	G G	A A	1	a0025 a0025	1	HG01243.hp1 HG01243.hp1	missense_variant	MODERATE	c.2518G>A c.2518G>A	p.Glu840Lys p.Glu840Lys	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2565/4830	2518/4731	840/1576	chr9	81992988
chr9:81993051	A A	G G	1	a0024 a0024	1	HG02630.hp1 HG02630.hp1	missense_variant	MODERATE	c.2581A>G c.2581A>G	p.Met861Val p.Met861Val	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2628/4830	2581/4731	861/1576	chr9	81993051
chr9:81993202	G G	T T	1	a0005 a0005	4	HG02486.hp1 HG02970.hp2 HG03516.hp1 others(1): Show HG02486.hp1 HG02970.hp2 HG03516.hp1 HG03540.hp1	missense_variant	MODERATE	c.2732G>T c.2732G>T	p.Arg911Leu p.Arg911Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2779/4830	2732/4731	911/1576	chr9	81993202
chr9:81993206	G G	A A	1	a0007 a0007	3	HG02698.hp2 HG03834.hp2 NA20905.hp2 HG02698.hp2 HG03834.hp2 NA20905.hp2	missense_variant	MODERATE	c.2736G>A c.2736G>A	p.Met912Ile p.Met912Ile	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2783/4830	2736/4731	912/1576	chr9	81993206
chr9:81993367	G G	T T	1	a0015 a0015	1	HG00408.hp2 HG00408.hp2	missense_variant	MODERATE	c.2897G>T c.2897G>T	p.Arg966Leu p.Arg966Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2944/4830	2897/4731	966/1576	chr9	81993367
chr9:81993807	G G	A A	1	a0023 a0023	1	HG03239.hp1 HG03239.hp1	missense_variant	MODERATE	c.3337G>A c.3337G>A	p.Ala1113Thr p.Ala1113Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3384/4830	3337/4731	1113/1576	chr9	81993807
chr9:81993974	C C	A A	1	a0016 a0016	1	HG02922.hp2 HG02922.hp2	missense_variant	MODERATE	c.3504C>A c.3504C>A	p.Ser1168Arg p.Ser1168Arg	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3551/4830	3504/4731	1168/1576	chr9	81993974
chr9:81993985	C C	T T	1	a0017 a0017	1	NA18977.hp1 NA18977.hp1	missense_variant	MODERATE	c.3515C>T c.3515C>T	p.Thr1172Ile p.Thr1172Ile	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3562/4830	3515/4731	1172/1576	chr9	81993985
chr9:81994153	C C	T T	1	a0022 a0022	1	HG02155.hp1 HG02155.hp1	missense_variant	MODERATE	c.3683C>T c.3683C>T	p.Ala1228Val p.Ala1228Val	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3730/4830	3683/4731	1228/1576	chr9	81994153
chr9:81994264	G G	A A	1	a0018 a0018	1	HG03453.hp1 HG03453.hp1	missense_variant	MODERATE	c.3794G>A c.3794G>A	p.Arg1265His p.Arg1265His	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3841/4830	3794/4731	1265/1576	chr9	81994264
chr9:81994324	C C	T T	2	a0018 a0019 a0018 a0019	2	HG02647.hp1 HG03453.hp1 HG02647.hp1 HG03453.hp1	missense_variant	MODERATE	c.3854C>T c.3854C>T	p.Thr1285Met p.Thr1285Met	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3901/4830	3854/4731	1285/1576	chr9	81994324
chr9:81994440	C C	T T	1	a0029 a0029	1	HG03579.hp1 HG03579.hp1	missense_variant	MODERATE	c.3970C>T c.3970C>T	p.His1324Tyr p.His1324Tyr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4017/4830	3970/4731	1324/1576	chr9	81994440
chr9:81994701	G G	C C	1	a0021 a0021	1	HG02602.hp1 HG02602.hp1	missense_variant	MODERATE	c.4231G>C c.4231G>C	p.Glu1411Gln p.Glu1411Gln	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4278/4830	4231/4731	1411/1576	chr9	81994701
chr9:81994731	C C	T T	1	a0003 a0003	9	HG02572.hp1 HG02647.hp2 HG02717.hp1 others(6): Show HG02572.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02818.hp1 HG03486.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp2	missense_variant	MODERATE	c.4261C>T c.4261C>T	p.His1421Tyr p.His1421Tyr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4308/4830	4261/4731	1421/1576	chr9	81994731
chr9:81994834	A A	G G	1	a0020 a0020	1	NA19030.hp1 NA19030.hp1	missense_variant	MODERATE	c.4364A>G c.4364A>G	p.Gln1455Arg p.Gln1455Arg	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4411/4830	4364/4731	1455/1576	chr9	81994834
chr9:81994879	G G	A A	1	a0011 a0011	2	HG00741.hp2 NA20752.hp2 HG00741.hp2 NA20752.hp2	missense_variant	MODERATE	c.4409G>A c.4409G>A	p.Arg1470His p.Arg1470His	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4456/4830	4409/4731	1470/1576	chr9	81994879
chr9:81994888	C C	G G	1	a0006 a0006	3	HG02559.hp2 HG03225.hp2 NA18906.hp2 HG02559.hp2 HG03225.hp2 NA18906.hp2	missense_variant	MODERATE	c.4418C>G c.4418C>G	p.Ser1473Cys p.Ser1473Cys	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4465/4830	4418/4731	1473/1576	chr9	81994888
chr9:81995026	C C	G G	1	a0003 a0003	9	HG02572.hp1 HG02647.hp2 HG02717.hp1 others(6): Show HG02572.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02818.hp1 HG03486.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp2	missense_variant	MODERATE	c.4556C>G c.4556C>G	p.Pro1519Arg p.Pro1519Arg	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4603/4830	4556/4731	1519/1576	chr9	81995026

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr9:81990469	G G	A A	1	a0001c0017 a0001c0017	1	HG02040.hp2 HG02040.hp2	synonymous_variant	LOW	c.285G>A c.285G>A	p.Leu95Leu p.Leu95Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	3/4	332/4830	285/4731	95/1576	chr9	81990469
chr9:81990782	T T	C C	1	a0006c0009 a0006c0009	3	HG02559.hp2 HG03225.hp2 NA18906.hp2 HG02559.hp2 HG03225.hp2 NA18906.hp2	synonymous_variant	LOW	c.312T>C c.312T>C	p.Pro104Pro p.Pro104Pro	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	359/4830	312/4731	104/1576	chr9	81990782
chr9:81991445	G G	A A	1	a0001c0020 a0001c0020	1	HG02698.hp1 HG02698.hp1	synonymous_variant	LOW	c.975G>A c.975G>A	p.Pro325Pro p.Pro325Pro	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1022/4830	975/4731	325/1576	chr9	81991445
chr9:81992018	T T	C C	1	a0016c0023 a0016c0023	1	HG02922.hp2 HG02922.hp2	synonymous_variant	LOW	c.1548T>C c.1548T>C	p.His516His p.His516His	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1595/4830	1548/4731	516/1576	chr9	81992018
chr9:81992024	T T	G G	1	a0001c0024 a0001c0024	1	HG02486.hp2 HG02486.hp2	synonymous_variant	LOW	c.1554T>G c.1554T>G	p.Thr518Thr p.Thr518Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1601/4830	1554/4731	518/1576	chr9	81992024
chr9:81992186	C C	T T	1	a0005c0008 a0005c0008	4	HG02486.hp1 HG02970.hp2 HG03516.hp1 others(1): Show HG02486.hp1 HG02970.hp2 HG03516.hp1 HG03540.hp1	synonymous_variant	LOW	c.1716C>T c.1716C>T	p.Ser572Ser p.Ser572Ser	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	1763/4830	1716/4731	572/1576	chr9	81992186
chr9:81992780	G G	A A	1	a0017c0027 a0017c0027	1	NA18977.hp1 NA18977.hp1	synonymous_variant	LOW	c.2310G>A c.2310G>A	p.Gly770Gly p.Gly770Gly	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2357/4830	2310/4731	770/1576	chr9	81992780
chr9:81992843	T T	A A	35	a0001c0001 a0001c0005 a0001c0006 others(32): Show a0001c0001 a0001c0005 a0001c0006 a0001c0015 a0001c0016 a0001c0017 a0001c0020 a0001c0024 a0001c0034 a0001c0035 a0001c0037 a0002c0003 a0003c0004 a0004c0007 a0005c0008 a0006c0009 a0008c0010 a0009c0012 a0010c0014 a0012c0019 a0013c0025 a0014c0026 a0015c0036 a0016c0023 a0017c0027 a0018c0029 a0019c0032 a0020c0031 a0021c0030 a0022c0033 a0024c0038 a0025c0028 a0026c0039 a0027c0040 a0029c0022	240	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(237): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp2 HG00673.hp1 HG00733.hp1 HG00735.hp1 HG00735.hp2 HG01071.hp1 HG01071.hp2 HG01099.hp2 HG01109.hp2 HG01123.hp1 HG01167.hp2 HG01168.hp2 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01257.hp2 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp1 HG01433.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01952.hp1 HG01975.hp1 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02155.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02698.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03704.hp1 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp2 HG03942.hp1 HG04184.hp2 HG04204.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18950.hp2 NA18953.hp2 NA18956.hp1 NA18957.hp1 NA18960.hp2 NA18961.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp2 NA18966.hp2 NA18968.hp1 NA18969.hp2 NA18971.hp1 NA18972.hp2 NA18973.hp2 NA18977.hp1 NA18977.hp2 NA18979.hp1 NA18980.hp2 NA18981.hp2 NA18985.hp2 NA18988.hp2 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp2 NA18998.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp2 NA19062.hp2 NA19064.hp1 NA19065.hp1 NA19066.hp2 NA19068.hp1 NA19070.hp1 NA19070.hp2 NA19075.hp2 NA19077.hp2 NA19079.hp1 NA19081.hp2 NA19082.hp1 NA19084.hp1 NA19089.hp1 NA19089.hp2 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.2373T>A c.2373T>A	p.Thr791Thr p.Thr791Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2420/4830	2373/4731	791/1576	chr9	81992843
chr9:81993299	C C	T T	1	a0001c0037 a0001c0037	1	HG02280.hp2 HG02280.hp2	synonymous_variant	LOW	c.2829C>T c.2829C>T	p.Asp943Asp p.Asp943Asp	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	2876/4830	2829/4731	943/1576	chr9	81993299
chr9:81993806	C C	T T	1	a0001c0006 a0001c0006	7	HG02055.hp1 HG02559.hp1 HG02615.hp1 others(4): Show HG02055.hp1 HG02559.hp1 HG02615.hp1 HG03098.hp2 HG03195.hp1 NA19030.hp2 NA20300.hp2	synonymous_variant	LOW	c.3336C>T c.3336C>T	p.Ser1112Ser p.Ser1112Ser	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3383/4830	3336/4731	1112/1576	chr9	81993806
chr9:81993821	A A	C C	1	a0001c0035 a0001c0035	1	HG03669.hp2 HG03669.hp2	synonymous_variant	LOW	c.3351A>C c.3351A>C	p.Ile1117Ile p.Ile1117Ile	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3398/4830	3351/4731	1117/1576	chr9	81993821
chr9:81994013	A A	G G	2	a0001c0016 a0014c0026 a0001c0016 a0014c0026	3	HG02109.hp2 HG03225.hp1 HG03471.hp2 HG02109.hp2 HG03225.hp1 HG03471.hp2	synonymous_variant	LOW	c.3543A>G c.3543A>G	p.Glu1181Glu p.Glu1181Glu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3590/4830	3543/4731	1181/1576	chr9	81994013
chr9:81994142	C C	T T	6	a0001c0005 a0001c0006 a0001c0034 others(3): Show a0001c0005 a0001c0006 a0001c0034 a0001c0037 a0016c0023 a0024c0038	20	HG00140.hp1 HG00733.hp1 HG00735.hp1 others(17): Show HG00140.hp1 HG00733.hp1 HG00735.hp1 HG02055.hp1 HG02056.hp1 HG02280.hp1 HG02280.hp2 HG02559.hp1 HG02615.hp1 HG02630.hp1 HG02886.hp2 HG02896.hp1 HG02922.hp2 HG03098.hp2 HG03195.hp1 HG03453.hp2 NA18968.hp1 NA19030.hp2 NA19240.hp1 NA20300.hp2	synonymous_variant	LOW	c.3672C>T c.3672C>T	p.Asp1224Asp p.Asp1224Asp	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3719/4830	3672/4731	1224/1576	chr9	81994142
chr9:81994190	T T	C C	1	a0001c0015 a0001c0015	2	HG02622.hp2 HG03098.hp1 HG02622.hp2 HG03098.hp1	synonymous_variant	LOW	c.3720T>C c.3720T>C	p.Asn1240Asn p.Asn1240Asn	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3767/4830	3720/4731	1240/1576	chr9	81994190
chr9:81994205	G G	T T	1	a0005c0008 a0005c0008	4	HG02486.hp1 HG02970.hp2 HG03516.hp1 others(1): Show HG02486.hp1 HG02970.hp2 HG03516.hp1 HG03540.hp1	synonymous_variant	LOW	c.3735G>T c.3735G>T	p.Ser1245Ser p.Ser1245Ser	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3782/4830	3735/4731	1245/1576	chr9	81994205
chr9:81994301	T T	C C	1	a0003c0004 a0003c0004	9	HG02572.hp1 HG02647.hp2 HG02717.hp1 others(6): Show HG02572.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02818.hp1 HG03486.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp2	synonymous_variant	LOW	c.3831T>C c.3831T>C	p.Cys1277Cys p.Cys1277Cys	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3878/4830	3831/4731	1277/1576	chr9	81994301
chr9:81994334	A A	T T	1	a0017c0027 a0017c0027	1	NA18977.hp1 NA18977.hp1	synonymous_variant	LOW	c.3864A>T c.3864A>T	p.Pro1288Pro p.Pro1288Pro	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	3911/4830	3864/4731	1288/1576	chr9	81994334
chr9:81994611	C C	T T	1	a0001c0042 a0001c0042	1	NA19091.hp2 NA19091.hp2	synonymous_variant	LOW	c.4141C>T c.4141C>T	p.Leu1381Leu p.Leu1381Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4188/4830	4141/4731	1381/1576	chr9	81994611
chr9:81994998	C C	T T	16	a0001c0005 a0001c0006 a0001c0015 others(13): Show a0001c0005 a0001c0006 a0001c0015 a0001c0016 a0001c0034 a0001c0037 a0003c0004 a0005c0008 a0006c0009 a0008c0010 a0014c0026 a0016c0023 a0017c0027 a0018c0029 a0019c0032 a0024c0038	47	HG00140.hp1 HG00733.hp1 HG00735.hp1 others(44): Show HG00140.hp1 HG00733.hp1 HG00735.hp1 HG02055.hp1 HG02056.hp1 HG02109.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02922.hp2 HG02970.hp2 HG03098.hp1 HG03098.hp2 HG03195.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03540.hp1 NA18906.hp2 NA18968.hp1 NA18977.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp1 NA19240.hp2 NA20300.hp2	synonymous_variant	LOW	c.4528C>T c.4528C>T	p.Leu1510Leu p.Leu1510Leu	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4575/4830	4528/4731	1510/1576	chr9	81994998
chr9:81995144	T T	C C	1	a0001c0034 a0001c0034	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.4674T>C c.4674T>C	p.Thr1558Thr p.Thr1558Thr	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	4/4	4721/4830	4674/4731	1558/1576	chr9	81995144

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr9:81989114	G G	C C	1	a0005c0008t0001g0006 a0005c0008t0001g0006	4	HG02486.hp1 HG02970.hp2 HG03516.hp1 others(1): Show HG02486.hp1 HG02970.hp2 HG03516.hp1 HG03540.hp1	intron_variant	MODIFIER	c.186+110G>C c.186+110G>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989114
chr9:81989193	T T	C C	1	a0001c0002t0001g0003 a0001c0002t0001g0003	16	HG00738.hp1 HG01081.hp2 HG01109.hp1 others(13): Show HG00738.hp1 HG01081.hp2 HG01109.hp1 HG01167.hp1 HG01256.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp2 HG01496.hp2 HG01928.hp1 HG01943.hp2 HG01975.hp2 HG01981.hp1 HG01993.hp1 HG02300.hp1 HG03831.hp2	intron_variant	MODIFIER	c.186+189T>C c.186+189T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989193
chr9:81989308	A A	G G	1	a0002c0003t0001g0019 a0002c0003t0001g0019	1	HG02273.hp2 HG02273.hp2	intron_variant	MODIFIER	c.186+304A>G c.186+304A>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989308
chr9:81989309	T T	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+305T>G c.186+305T>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989309
chr9:81989311	G G	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+307G>C c.186+307G>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989311
chr9:81989331	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+327C>T c.186+327C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989331
chr9:81989368	A A	T T	1	a0001c0002t0001g0018 a0001c0002t0001g0018	1	HG04184.hp1 HG04184.hp1	intron_variant	MODIFIER	c.186+364A>T c.186+364A>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989368
chr9:81989376	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+372T>C c.186+372T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989376
chr9:81989381	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+377C>T c.186+377C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989381
chr9:81989383	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+379T>C c.186+379T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989383
chr9:81989384	G G	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+380G>A c.186+380G>A	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989384
chr9:81989387	C C	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+383C>A c.186+383C>A	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989387
chr9:81989391	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.186+387T>C c.186+387T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989391
chr9:81989400	G G	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-378G>T c.187-378G>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989400
chr9:81989416	A A	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-362A>G c.187-362A>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989416
chr9:81989424	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-354T>C c.187-354T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989424
chr9:81989454	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-324T>C c.187-324T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989454
chr9:81989456	T T	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-322T>G c.187-322T>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989456
chr9:81989459	G G	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-319G>C c.187-319G>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989459
chr9:81989460	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-318C>T c.187-318C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989460
chr9:81989468	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-310C>T c.187-310C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989468
chr9:81989470	T T	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-308T>G c.187-308T>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989470
chr9:81989473	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-305C>T c.187-305C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989473
chr9:81989474	A A	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-304A>G c.187-304A>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989474
chr9:81989479	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-299T>C c.187-299T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989479
chr9:81989482	C C	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-296C>T c.187-296C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989482
chr9:81989483	A A	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03834.hp1 HG03834.hp1	intron_variant	MODIFIER	c.187-295A>G c.187-295A>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989483
chr9:81989539	GCTAA GCTAA	G G	1	a0001c0001t0001g0008 a0001c0001t0001g0008	3	HG01168.hp2 HG02109.hp1 HG02451.hp2 HG01168.hp2 HG02109.hp1 HG02451.hp2	intron_variant	MODIFIER	c.187-236_187-233del others(4): Show c.187-236_187-233delAACT	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	81989539
chr9:81989588	G G	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA18963.hp1 NA18963.hp1	intron_variant	MODIFIER	c.187-190G>T c.187-190G>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989588
chr9:81989634	A A	C C	1	a0001c0002t0001g0016 a0001c0002t0001g0016	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.187-144A>C c.187-144A>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989634
chr9:81989684	TAATG TAATG	T T	24	a0001c0001t0001g0002 a0001c0001t0001g0015 a0001c0001t0001g0017 others(21): Show a0001c0001t0001g0002 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0002t0001g0002 a0001c0005t0001g0004 a0001c0006t0001g0004 a0001c0015t0001g0002 a0001c0016t0001g0002 a0001c0034t0001g0004 a0001c0037t0001g0004 a0001c0042t0001g0002 a0003c0004t0001g0002 a0004c0007t0001g0002 a0006c0009t0001g0002 a0007c0011t0001g0002 a0008c0010t0001g0002 a0009c0012t0001g0002 a0012c0019t0001g0002 a0014c0026t0001g0002 a0016c0023t0001g0004 a0017c0027t0001g0002 a0018c0029t0001g0002 a0019c0032t0001g0002 a0029c0022t0001g0002	98	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(95): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00609.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01109.hp2 HG01123.hp1 HG01192.hp2 HG01255.hp2 HG01257.hp2 HG01258.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01891.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02109.hp2 HG02155.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03579.hp1 HG03654.hp2 HG03834.hp2 HG03942.hp2 HG04204.hp2 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18946.hp1 NA18950.hp1 NA18953.hp2 NA18963.hp1 NA18966.hp2 NA18968.hp1 NA18971.hp2 NA18972.hp1 NA18973.hp1 NA18973.hp2 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18995.hp2 NA19004.hp2 NA19012.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19065.hp2 NA19068.hp1 NA19079.hp2 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.187-64_187-61delAT others(2): Show c.187-64_187-61delATGA	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	81989684
chr9:81989684	TAATGAAT others(1): Show TAATGAATG	T T	1	a0005c0008t0001g0006 a0005c0008t0001g0006	4	HG02486.hp1 HG02970.hp2 HG03516.hp1 others(1): Show HG02486.hp1 HG02970.hp2 HG03516.hp1 HG03540.hp1	intron_variant	MODIFIER	c.187-68_187-61delAT others(6): Show c.187-68_187-61delATGAATGA	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	81989684
chr9:81989714	ATGAG ATGAG	A A	2	a0001c0005t0001g0007 a0024c0038t0001g0007 a0001c0005t0001g0007 a0024c0038t0001g0007	4	HG00733.hp1 HG02630.hp1 HG02886.hp2 others(1): Show HG00733.hp1 HG02630.hp1 HG02886.hp2 HG02896.hp1	intron_variant	MODIFIER	c.187-63_187-60delTG others(2): Show c.187-63_187-60delTGAG	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	1/3		chr9	81989714
chr9:81989894	A A	G G	2	a0001c0001t0001g0009 a0021c0030t0001g0009 a0001c0001t0001g0009 a0021c0030t0001g0009	2	HG01099.hp2 HG02602.hp1 HG01099.hp2 HG02602.hp1	intron_variant	MODIFIER	c.232+71A>G c.232+71A>G	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	2/3		chr9	81989894
chr9:81989902	T T	A A	1	a0001c0002t0001g0005 a0001c0002t0001g0005	5	HG00544.hp1 NA18983.hp2 NA19012.hp1 others(2): Show HG00544.hp1 NA18983.hp2 NA19012.hp1 NA19054.hp1 NA19075.hp1	intron_variant	MODIFIER	c.232+79T>A c.232+79T>A	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	2/3		chr9	81989902
chr9:81990137	G G	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.233-280G>A c.233-280G>A	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	2/3		chr9	81990137
chr9:81990248	C C	T T	1	a0001c0002t0001g0014 a0001c0002t0001g0014	1	NA18940.hp2 NA18940.hp2	intron_variant	MODIFIER	c.233-169C>T c.233-169C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	2/3		chr9	81990248
chr9:81990326	C C	A A	1	a0001c0002t0001g0011 a0001c0002t0001g0011	1	NA18980.hp1 NA18980.hp1	intron_variant	MODIFIER	c.233-91C>A c.233-91C>A	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	2/3		chr9	81990326
chr9:81990378	G G	A A	7	a0001c0005t0001g0004 a0001c0005t0001g0007 a0001c0006t0001g0004 others(4): Show a0001c0005t0001g0004 a0001c0005t0001g0007 a0001c0006t0001g0004 a0001c0034t0001g0004 a0001c0037t0001g0004 a0016c0023t0001g0004 a0024c0038t0001g0007	20	HG00140.hp1 HG00733.hp1 HG00735.hp1 others(17): Show HG00140.hp1 HG00733.hp1 HG00735.hp1 HG02055.hp1 HG02056.hp1 HG02280.hp1 HG02280.hp2 HG02559.hp1 HG02615.hp1 HG02630.hp1 HG02886.hp2 HG02896.hp1 HG02922.hp2 HG03098.hp2 HG03195.hp1 HG03453.hp2 NA18968.hp1 NA19030.hp2 NA19240.hp1 NA20300.hp2	intron_variant	MODIFIER	c.233-39G>A c.233-39G>A	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	2/3		chr9	81990378
chr9:81990542	C C	T T	1	a0001c0002t0001g0013 a0001c0002t0001g0013	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.302+56C>T c.302+56C>T	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	3/3		chr9	81990542
chr9:81990553	T T	C C	1	a0025c0028t0001g0012 a0025c0028t0001g0012	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.302+67T>C c.302+67T>C	SPATA31D1	ENSG00000214929.4	transcript	ENST00000344803.3	protein_coding	3/3		chr9	81990553

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🧬 JoGo Online Haplotype Explorer SPATA31D1_chr9_81983772_82000253

JoGo Local Haplotype Explorer (on iGV) SPATA31D1_chr9_81983772_82000253

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 31)

CCoding Level Haplotype Info (Total: 43)

TTranscript Level Haplotype Info (Total: 1)

GGenebody Level Haplotype Info (Total: 19)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 43)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 43)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 60)

Haplotype Details by Sample (Haploid Level) (Total: 382)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 37)

CCoding Level Variants (Synonymous Mutations) (Total: 20)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 41)

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Annotation (Repeats)

Annotation (SNP Array)