JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31D1_chr9_81983772_82000253	0/0	a0030	1576	1	1	0	0	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D1_chr9_81983772_82000253	0/0	a0031	1576	1	0	0	1	0	0	copy fasta	SPATA31D1	chr9	81983772	82000253
SPATA31D3_chr9_81938500_81955093	1/0	a0001	917	188	38	30	95	5	19	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0002	917	79	6	21	37	5	10	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0003	917	23	1	1	19	1	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0004	917	15	10	1	2	1	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0005	917	11	0	10	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0006	917	10	10	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0007	917	4	4	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0008	917	4	0	0	3	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0009	917	4	0	4	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0010	917	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0011	917	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0012	917	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/1	a0013	917	3	0	2	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0014	917	3	3	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0015	917	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0016	917	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0017	917	2	2	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0018	917	2	0	2	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0019	82	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0020	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0021	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0022	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0023	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0024	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0025	917	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0026	917	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0027	917	1	0	1	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0028	917	1	0	0	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0029	917	1	0	0	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0030	917	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0031	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0032	917	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0033	917	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0034	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0035	917	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0036	917	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	a0037	917	1	0	0	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D4_chr9_81923428_81939998	0/0	a0000	0	11	2	0	6	1	2	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	1/1	a0001	917	243	38	50	115	10	28	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0002	917	14	0	11	1	1	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0003	917	11	9	1	0	1	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0004	917	11	0	0	11	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0005	917	10	9	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0006	917	9	9	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0007	917	6	1	2	2	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0008	917	5	0	0	4	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0009	917	5	0	2	0	0	3	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0010	917	4	0	2	0	1	1	copy fasta	SPATA31D4	chr9	81923428	81939998