JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPECC1L_chr22_24265831_24422738	0/0	a0002	1117	7	0	0	7	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	a0003	1117	2	0	0	2	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/1	a0004	1117	1	0	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	a0005	1117	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	a0006	1117	1	0	0	0	0	1	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	a0007	1117	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	a0008	1117	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	1/0	a0009	1117	1	0	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	a0010	1117	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1_chr17_20004359_20324026	0/0	a0001	1068	143	69	24	32	6	12	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	1/1	a0002	1068	46	5	18	3	7	11	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	a0003	1068	40	8	14	12	3	3	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	a0004	1067	21	0	0	21	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPEF1_chr20_3772504_3786448	1/1	a0001	236	408	85	78	179	16	48	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	a0002	236	9	9	0	0	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF1_chr20_3772504_3786448	0/0	a0003	236	1	0	0	1	0	0	copy fasta	SPEF1	chr20	3772504	3786448
SPEF2_chr5_35612863_35819611	0/0	a0001	1822	65	12	18	22	2	11	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0002	1822	41	7	5	27	0	2	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/1	a0003	1822	35	11	13	4	1	5	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0004	1822	32	4	7	18	0	3	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0005	1822	16	4	0	11	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0006	1822	13	6	0	6	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0007	1822	9	5	3	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0008	1822	5	4	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0009	1822	4	2	0	0	0	2	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0010	1822	4	2	0	0	0	2	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0011	1822	4	0	4	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	1/0	a0012	1822	3	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0013	1822	2	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0014	1822	2	0	1	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0015	1822	2	0	2	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0016	1822	2	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0017	1822	2	2	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0018	1822	2	1	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0019	1822	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0020	446	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0021	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0022	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0023	1822	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0024	1822	1	0	0	0	1	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0025	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0026	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0027	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0028	1822	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0029	1822	1	0	0	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0030	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0031	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0032	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0033	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0034	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611