JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPPL2C_chr17_45839881_45852067	0/0	a0017	684	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0018	684	1	0	1	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0019	684	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0020	684	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0021	684	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0022	684	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0023	684	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0024	684	1	0	1	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL3_chr12_120757510_120909358	1/1	a0001	384	320	80	44	148	16	30	copy fasta	SPPL3	chr12	120757510	120909358
SPRED1_chr15_38247836_38362249	1/1	a0001	444	377	94	62	169	10	40	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	a0002	444	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED2_chr2_65305851_65437599	1/1	a0001	418	275	84	50	99	8	32	copy fasta	SPRED2	chr2	65305851	65437599
SPRED2_chr2_65305851_65437599	0/0	a0002	418	1	0	0	1	0	0	copy fasta	SPRED2	chr2	65305851	65437599
SPRED3_chr19_38383697_38404587	1/1	a0001	410	355	75	58	171	14	35	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	a0002	410	2	0	2	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	a0003	410	1	0	0	1	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	a0004	410	1	0	0	0	0	1	copy fasta	SPRED3	chr19	38383697	38404587
SPRED3_chr19_38383697_38404587	0/0	a0005	410	1	1	0	0	0	0	copy fasta	SPRED3	chr19	38383697	38404587
SPRING1_chr12_116705171_116743069	1/1	a0001	205	356	86	47	176	13	32	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	a0002	205	2	0	2	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	a0003	205	2	0	1	0	1	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	a0004	205	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	a0005	205	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRN_chr10_133415666_133429625	0/1	a0001	151	224	19	43	121	10	30	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	1/0	a0002	151	200	66	39	72	8	14	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0003	147	35	2	0	32	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0004	155	8	8	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0005	151	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0006	151	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0007	147	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0008	151	1	0	0	0	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0009	151	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0010	151	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	a0011	151	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRR1A_chr1_152979081_152990814	0/1	a0001	89	215	40	29	114	6	25	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	1/0	a0002	89	153	27	37	67	8	13	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	a0003	89	27	23	0	4	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	a0004	81	3	3	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	a0005	81	3	3	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	a0006	89	1	0	0	1	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1B_chr1_153026203_153037900	1/0	a0001	89	224	49	45	96	11	22	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/1	a0002	89	218	38	33	116	7	23	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/0	a0003	89	1	1	0	0	0	0	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/0	a0004	65	1	0	0	0	0	1	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR2A_chr1_153051120_153062512	1/1	a0001	72	432	76	83	214	14	43	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	a0002	72	8	8	0	0	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	a0003	72	1	0	0	0	0	1	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	a0004	72	1	0	1	0	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2B_chr1_153065226_153076611	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	1/1	a0001	72	421	92	74	197	16	40	copy fasta	SPRR2B	chr1	153065226	153076611