JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRR_chr17_2298950_2330260	0/0	a0003	340	1	0	0	1	0	0	copy fasta	SRR	chr17	2298950	2330260
SRSF10_chr1_23959347_23985327	1/1	a0001	262	383	83	70	176	14	38	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	a0002	258	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF11_chr1_70216380_70258052	1/1	a0001	484	338	64	64	154	12	42	copy fasta	SRSF11	chr1	70216380	70258052
SRSF12_chr6_89090959_89123071	1/1	a0001	261	375	96	84	142	13	38	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	a0002	261	1	0	0	0	1	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF1_chr17_57995919_58012246	1/1	a0001	248	342	92	62	130	18	38	copy fasta	SRSF1	chr17	57995919	58012246
SRSF2_chr17_76729115_76742331	1/1	a0001	221	398	96	64	180	16	40	copy fasta	SRSF2	chr17	76729115	76742331
SRSF3_chr6_36589362_36610600	1/1	a0001	164	382	92	74	168	8	38	copy fasta	SRSF3	chr6	36589362	36610600
SRSF4_chr1_29142743_29186900	0/0	a0001	494	140	47	45	23	6	19	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	1/1	a0002	494	125	24	21	71	0	7	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0003	494	95	12	8	63	2	10	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0004	494	2	1	1	0	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0005	494	2	0	2	0	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0006	494	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0007	494	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0008	494	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	a0009	494	1	0	1	0	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF5_chr14_69762142_69777005	1/1	a0001	272	376	94	74	150	14	42	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	a0002	272	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	a0003	272	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF6_chr20_43452896_43469243	1/1	a0001	344	454	92	80	212	18	50	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	a0002	344	9	0	0	9	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	a0003	344	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF7_chr2_38738599_38756361	1/1	a0001	238	426	90	76	194	18	46	copy fasta	SRSF7	chr2	38738599	38756361
SRSF8_chr11_95061919_95076225	1/1	a0001	282	398	97	78	164	14	43	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	a0002	282	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	a0003	282	1	0	0	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	a0004	282	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	a0005	282	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF9_chr12_120456672_120474748	1/1	a0001	221	442	92	78	206	18	46	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	a0002	221	2	0	2	0	0	0	copy fasta	SRSF9	chr12	120456672	120474748
SRXN1_chr20_641615_658200	1/1	a0001	137	417	87	82	182	16	48	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	a0002	137	4	4	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	a0003	137	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRY_chrY_2781855_2792682	1/1	a0001	204	124	18	19	66	4	15	copy fasta	SRY	chrY	2781855	2792682
SS18L1_chr20_62138769_62187514	1/1	a0001	396	290	75	62	101	10	40	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	a0002	396	20	16	4	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	a0003	396	3	0	0	3	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	a0004	208	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	a0005	396	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	a0006	396	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L2_chr3_42585860_42601934	1/1	a0001	77	388	88	74	166	14	44	copy fasta	SS18L2	chr3	42585860	42601934
SS18_chr18_26011253_26095613	1/1	a0001	418	309	78	57	128	10	34	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	a0002	418	6	5	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	a0003	418	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	a0004	418	1	0	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	a0005	418	1	0	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SSBP1_chr7_141733358_141755488	1/1	a0001	148	415	87	68	198	16	44	copy fasta	SSBP1	chr7	141733358	141755488
SSBP1_chr7_141733358_141755488	0/0	a0002	148	7	0	0	7	0	0	copy fasta	SSBP1	chr7	141733358	141755488