JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STAC_chr3_36375504_36553007	0/0	a0002	402	7	7	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	a0003	402	6	4	0	2	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	a0004	402	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	a0005	402	1	1	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007
STAG1_chr3_136331236_136757378	1/1	a0001	1258	219	52	49	64	16	36	copy fasta	STAG1	chr3	136331236	136757378
STAG1_chr3_136331236_136757378	0/0	a0002	1258	21	18	3	0	0	0	copy fasta	STAG1	chr3	136331236	136757378
STAG2_chrX_123956706_124107656	1/1	a0001	1268	273	70	44	120	7	30	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	a0002	574	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	a0003	679	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG2_chrX_123956706_124107656	0/0	a0004	659	1	0	0	1	0	0	copy fasta	STAG2	chrX	123956706	124107656
STAG3_chr7_100172918_100219381	1/1	a0001	1226	292	78	39	119	12	42	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	a0002	1226	27	0	5	12	4	6	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	a0003	1226	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	a0004	1226	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAG3_chr7_100172918_100219381	0/0	a0005	1226	1	0	0	1	0	0	copy fasta	STAG3	chr7	100172918	100219381
STAM2_chr2_152111801_152180763	1/1	a0001	525	358	90	64	144	14	44	copy fasta	STAM2	chr2	152111801	152180763
STAM2_chr2_152111801_152180763	0/0	a0002	525	2	0	0	2	0	0	copy fasta	STAM2	chr2	152111801	152180763
STAMBPL1_chr10_88875245_88928487	1/1	a0001	436	353	70	54	175	17	35	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	a0002	436	24	13	7	0	1	3	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	a0003	436	5	5	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	a0004	436	4	1	3	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	a0005	436	1	1	0	0	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBPL1_chr10_88875245_88928487	0/0	a0006	436	1	0	0	1	0	0	copy fasta	STAMBPL1	chr10	88875245	88928487
STAMBP_chr2_73823961_73872168	1/1	a0001	424	364	93	70	153	14	32	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	a0002	424	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	a0003	424	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	a0004	424	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	a0005	424	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAM_chr10_17639151_17721824	1/1	a0001	540	422	92	80	197	16	35	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	a0002	540	2	0	0	2	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	a0003	540	1	0	0	0	0	1	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	a0004	540	1	0	0	1	0	0	copy fasta	STAM	chr10	17639151	17721824
STAP1_chr4_67553727_67612337	1/1	a0001	295	378	86	78	163	14	35	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	a0002	295	2	0	0	2	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	a0003	295	1	0	0	1	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	a0004	295	1	0	0	0	0	1	copy fasta	STAP1	chr4	67553727	67612337
STAP2_chr19_4319043_4343827	0/1	a0001	403	256	71	49	97	8	30	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	1/0	a0002	403	127	24	28	54	6	14	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	a0003	403	1	0	0	1	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	a0004	403	1	0	0	1	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	a0005	403	1	0	0	1	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	a0006	168	1	0	1	0	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	a0007	403	1	1	0	0	0	0	copy fasta	STAP2	chr19	4319043	4343827
STARD10_chr11_72749729_72799047	1/1	a0001	291	375	98	72	152	14	37	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	a0002	291	1	0	0	0	0	1	copy fasta	STARD10	chr11	72749729	72799047
STARD13_chr13_33098137_33290755	1/1	a0001	1113	211	77	34	67	6	25	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0002	1113	70	5	21	33	1	10	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0003	1113	9	0	0	9	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0004	1113	5	1	1	0	1	2	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0005	1113	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755