JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SYT13_chr11_45235302_45291341	1/1	a0001	426	359	84	61	169	6	37	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0002	426	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0003	426	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0004	426	1	0	1	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0005	426	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0006	426	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0007	426	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	a0008	426	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT14_chr1_209933217_210176315	1/1	a0001	574	322	76	69	140	6	29	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	a0002	573	35	0	3	21	4	7	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	a0003	574	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT15B_chr10_47739717_47768592	0/0	a0001	421	205	31	43	96	10	25	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0002	421	112	24	12	71	2	3	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0003	421	7	5	2	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0004	421	6	3	3	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0005	421	2	2	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0006	421	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0007	421	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0008	421	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0009	421	1	0	0	1	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0010	421	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0011	421	1	1	0	0	0	0	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0012	421	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15B_chr10_47739717_47768592	0/0	a0013	421	1	0	0	0	0	1	copy fasta	SYT15B	chr10	47739717	47768592
SYT15_chr10_46574128_46597064	0/0	a0001	421	257	45	50	126	9	27	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0002	421	8	1	4	0	0	3	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0003	421	5	3	2	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0004	421	4	2	2	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0005	421	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0006	421	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0007	421	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0008	421	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0009	377	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0010	421	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0011	421	1	0	0	0	1	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0012	421	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0013	421	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	a0014	421	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT16_chr14_61807703_62117550	0/0	a0001	645	116	64	24	13	4	11	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	a0002	645	29	1	12	13	0	3	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	1/1	a0003	645	23	3	6	6	3	3	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	a0004	645	2	2	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	a0005	645	1	0	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	a0006	645	1	0	0	0	1	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	a0007	645	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	a0008	645	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT17_chr16_19163240_19273332	1/1	a0001	474	322	96	62	109	18	35	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	a0002	229	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	a0003	474	1	0	0	0	0	1	copy fasta	SYT17	chr16	19163240	19273332
SYT1_chr12_78859774_79457008	1/1	a0001	422	62	32	14	12	0	2	copy fasta	SYT1	chr12	78859774	79457008