JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCP11X1_chrX_102210301_102231795	0/0	a0001	502	19	5	4	6	3	1	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	a0002	502	14	8	4	1	0	1	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	a0003	60	1	0	0	0	0	1	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	a0004	455	1	0	0	1	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	a0005	295	1	0	0	1	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X1_chrX_102210301_102231795	0/0	a0006	223	1	0	1	0	0	0	copy fasta	TCP11X1	chrX	102210301	102231795
TCP11X2_chrX_102455315_102476812	0/0	a0001	502	86	28	18	27	4	9	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0002	502	39	2	8	26	0	3	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0003	295	4	3	0	0	0	1	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0004	502	2	0	0	2	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0005	172	1	1	0	0	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0006	245	1	0	0	0	1	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0007	245	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0008	502	1	0	0	0	0	1	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0009	455	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11X2_chrX_102455315_102476812	0/0	a0010	261	1	0	0	1	0	0	copy fasta	TCP11X2	chrX	102455315	102476812
TCP11_chr6_35113075_35146339	1/1	a0001	503	339	56	55	178	13	35	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0002	503	55	18	14	17	1	5	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0003	503	8	0	0	8	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0004	503	3	1	0	0	0	2	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0005	503	2	2	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0006	503	2	2	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0007	304	1	0	0	1	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0008	509	1	1	0	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP11_chr6_35113075_35146339	0/0	a0009	503	1	0	1	0	0	0	copy fasta	TCP11	chr6	35113075	35146339
TCP1_chr6_159773498_159794602	1/1	a0001	556	391	84	75	174	14	42	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	a0002	556	10	10	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	a0003	556	1	1	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	a0004	556	1	1	0	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCP1_chr6_159773498_159794602	0/0	a0005	556	1	0	1	0	0	0	copy fasta	TCP1	chr6	159773498	159794602
TCTA_chr3_49407423_49421476	1/1	a0001	103	348	92	68	128	18	40	copy fasta	TCTA	chr3	49407423	49421476
TCTE1_chr6_44273734_44302698	0/1	a0001	501	176	34	43	61	11	26	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0002	501	80	3	15	53	0	9	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0003	501	50	0	3	44	3	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	1/0	a0004	501	46	42	1	0	0	2	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0005	501	3	2	1	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0006	501	3	3	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0007	30	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0008	501	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0009	501	1	0	1	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0010	501	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0011	501	1	0	0	0	0	1	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	a0012	501	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTN1_chr12_110609129_110654430	1/1	a0001	592	270	81	56	85	16	30	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0002	592	5	0	2	1	0	2	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0003	592	2	2	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0004	592	2	0	2	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0005	592	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0006	592	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0007	592	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430