JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TDRD15_chr2_21118968_21149368	0/0	a0020	1934	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0021	1934	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD1_chr10_114174353_114237666	1/1	a0001	1180	288	77	53	116	12	28	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0002	1180	6	6	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0003	1180	2	0	0	2	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0004	1180	2	1	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0005	1180	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0006	1180	1	1	0	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0007	1180	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0008	1180	1	0	0	1	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0009	1180	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD1_chr10_114174353_114237666	0/0	a0010	1180	1	0	1	0	0	0	copy fasta	TDRD1	chr10	114174353	114237666
TDRD3_chr13_60392220_60578871	1/1	a0001	744	245	68	56	76	14	29	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	a0002	743	22	3	3	1	2	13	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	a0003	744	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	a0004	744	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	a0005	744	1	0	1	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	a0006	744	1	1	0	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	a0007	744	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD5_chr1_179586832_179696272	1/0	a0001	1035	162	54	32	56	6	13	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0002	1035	109	5	32	55	4	13	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0003	1035	33	14	1	17	0	1	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0004	1035	29	5	4	20	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/1	a0005	1035	29	0	6	16	2	4	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0006	1035	5	5	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0007	1035	4	3	1	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0008	1035	2	2	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0009	1035	2	2	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0010	1035	2	0	0	0	2	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0011	1035	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0012	1035	1	0	0	0	0	1	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0013	1035	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0014	1035	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	a0015	1035	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD6_chr6_46682885_46709319	0/0	a0001	2096	146	16	30	70	6	24	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0002	2096	136	41	25	54	6	10	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0003	2096	43	2	16	19	3	3	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0004	2096	16	0	0	16	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0005	2096	15	15	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0006	2096	11	6	2	0	1	2	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0007	2096	6	0	0	6	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0008	2096	4	0	0	4	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0009	2096	4	0	0	4	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0010	2096	3	0	0	3	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0011	2096	2	2	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0012	2096	2	0	0	0	0	2	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0013	2096	2	0	0	0	0	2	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0014	2096	2	0	0	2	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0015	2096	2	0	0	2	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0016	2096	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319