JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX26_chr13_30927656_30980500	0/0	a0005	289	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX28_chrX_154266265_154300124	1/1	a0001	410	13	1	1	7	0	2	copy fasta	TEX28	chrX	154266265	154300124
TEX28_chrX_154266265_154300124	0/0	a0002	304	1	1	0	0	0	0	copy fasta	TEX28	chrX	154266265	154300124
TEX28_chrX_154266265_154300124	0/0	a0003	331	1	0	0	1	0	0	copy fasta	TEX28	chrX	154266265	154300124
TEX29_chr13_111315642_111349248	1/1	a0001	151	410	88	78	184	16	42	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	a0002	151	4	3	0	0	0	1	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	a0003	151	1	0	0	0	0	1	copy fasta	TEX29	chr13	111315642	111349248
TEX29_chr13_111315642_111349248	0/0	a0004	151	1	1	0	0	0	0	copy fasta	TEX29	chr13	111315642	111349248
TEX2_chr17_64142227_64268260	1/1	a0001	1127	196	53	21	80	10	30	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	a0002	1127	23	22	1	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	a0003	1127	1	0	0	1	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	a0004	1127	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	a0005	1127	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	a0006	1127	1	1	0	0	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX2_chr17_64142227_64268260	0/0	a0007	1127	1	0	0	1	0	0	copy fasta	TEX2	chr17	64142227	64268260
TEX30_chr13_102760888_102778786	1/1	a0001	227	453	94	86	215	14	42	copy fasta	TEX30	chr13	102760888	102778786
TEX30_chr13_102760888_102778786	0/0	a0002	227	1	0	0	1	0	0	copy fasta	TEX30	chr13	102760888	102778786
TEX33_chr22_36986125_37012851	1/1	a0001	280	216	72	40	62	14	26	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0002	280	143	10	13	105	4	11	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0003	280	48	13	18	15	0	2	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0004	280	2	2	0	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0005	280	2	0	0	2	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0006	280	1	0	0	0	0	1	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0007	88	1	0	1	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0008	280	1	0	0	1	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0009	280	1	0	1	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0010	280	1	0	1	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0011	280	1	0	0	1	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX33_chr22_36986125_37012851	0/0	a0012	280	1	1	0	0	0	0	copy fasta	TEX33	chr22	36986125	37012851
TEX35_chr1_178508109_178527650	1/1	a0001	233	234	63	38	100	6	25	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0002	233	141	10	32	87	4	8	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0003	233	11	9	2	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0004	233	10	10	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0005	233	1	0	0	0	0	1	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0006	233	1	0	0	1	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0007	233	1	1	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX35_chr1_178508109_178527650	0/0	a0008	233	1	1	0	0	0	0	copy fasta	TEX35	chr1	178508109	178527650
TEX36_chr10_125650694_125688163	1/1	a0001	186	399	94	73	172	14	44	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	a0002	186	3	1	2	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	a0003	186	3	3	0	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	a0004	186	2	0	0	2	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	a0005	186	1	0	0	1	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	a0006	186	1	0	0	1	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX36_chr10_125650694_125688163	0/0	a0007	186	1	0	1	0	0	0	copy fasta	TEX36	chr10	125650694	125688163
TEX37_chr2_88519649_88534585	1/1	a0001	180	383	75	74	166	16	50	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	a0002	180	7	7	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	a0003	180	6	6	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	a0004	180	4	4	0	0	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	a0005	25	1	0	0	1	0	0	copy fasta	TEX37	chr2	88519649	88534585
TEX37_chr2_88519649_88534585	0/0	a0006	180	1	0	0	1	0	0	copy fasta	TEX37	chr2	88519649	88534585