JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TGFBR2_chr3_30601601_30699142	0/0	a0003	567	3	0	0	3	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	a0004	567	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	a0005	567	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR3L_chr19_7909830_7924097	1/1	a0001	316	445	97	84	194	18	50	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	a0002	316	1	1	0	0	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3_chr1_91675343_91891151	1/0	a0001	851	208	71	48	52	10	26	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0002	851	60	13	9	34	2	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0003	851	4	0	1	3	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0004	851	3	0	0	3	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0005	851	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0006	851	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0007	851	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0008	851	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0009	851	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0010	851	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0011	851	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	a0012	851	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/1	a0013	851	1	0	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBRAP1_chr2_105259414_105334735	1/0	a0001	860	208	51	20	110	6	20	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/1	a0002	860	168	32	44	57	10	24	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	a0003	860	2	2	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	a0004	860	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	a0005	860	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGIF1_chr18_3445172_3464978	1/1	a0001	272	401	92	71	179	13	44	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	a0002	272	42	1	6	29	2	4	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	a0003	272	3	1	1	0	1	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	a0004	272	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	a0005	272	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF2LX_chrX_89916908_89927883	0/1	a0001	241	236	73	39	106	6	11	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	1/0	a0002	241	72	2	13	37	4	15	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	a0003	241	10	1	4	0	3	2	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	a0004	241	4	0	0	4	0	0	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LX_chrX_89916908_89927883	0/0	a0005	241	1	0	0	0	0	1	copy fasta	TGIF2LX	chrX	89916908	89927883
TGIF2LY_chrY_3574067_3585041	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2LY_chrY_3574067_3585041	1/1	a0001	185	129	16	20	70	5	16	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2LY_chrY_3574067_3585041	0/0	a0002	185	1	1	0	0	0	0	copy fasta	TGIF2LY	chrY	3574067	3585041
TGIF2_chr20_36568597_36598950	1/1	a0001	237	362	96	74	142	18	30	copy fasta	TGIF2	chr20	36568597	36598950
TGM1_chr14_24244114_24268177	1/1	a0001	817	396	81	69	183	14	47	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0002	817	3	0	0	3	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0003	817	2	2	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0004	817	2	0	0	2	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0005	817	2	2	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0006	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0007	817	1	0	0	0	1	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0008	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0009	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0010	817	1	0	0	0	0	1	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0011	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0012	817	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0013	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177