Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	90655
ensemblid	ENSG00000176679.9
hgncid	18569
symbol	TGIF2LY
name	TGFB induced factor homeobox 2 like Y-linked
refseq_nuc	NM_139214.3
refseq_prot	NP_631960.1
ensembl_nuc	ENST00000321217.5
ensembl_prot	ENSP00000318502.4
mane_status	MANE Select
chr	chrY
start	3579067
end	3580041
strand	+
ver	v1.2
region	chrY:3579067-3580041
region5000	chrY:3574067-3585041
regionname0	TGIF2LY_chrY_3579067_3580041
regionname5000	TGIF2LY_chrY_3574067_3585041

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	185	129	16	20	70	5	16	55	TGIF2LY_chrY_3574067_3585041	TGIF2LY	MEAAA others(180): Show MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHK KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNW FINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTEASVPAKSGPVV QTMYKACPCGPCQRARCQERSNQIRSRPLARSSPE	chrY	3574067	3585041
a0002	0/0	185	1	1	0	0	0	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	MEAAA others(180): Show MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHK KKRKGNLPAESVKILRDWMYKHRYKAYPSEEEKQMLSEKTNLSLLRISNW FINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTEASVPAKSGPVV QTMYKACPCGPCQRARCQERSNQIRSRPLARSSPE	chrY	3574067	3585041
a0003	0/0	185	1	0	0	1	0	0	1	TGIF2LY_chrY_3574067_3585041	TGIF2LY	MEAAA others(180): Show MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHK KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNW FINARRRILPDMLQQRRNDPIIGHKTGKDAPCHPPAEHRGVCAGQVRASG PDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTG	chrY	3574067	3585041

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	555	129	16	20	70	5	16	TGIF2LY_chrY_3574067_3585041	TGIF2LY	ATGGA others(550): Show ATGGAGGCCGCTGCAGACGGCCCGGCTGAGACCCAAAGCCCGGTGGAAAA AGACAGCCCGGCGAAGACCCAAAGCCCAGCCCAAGACACCTCAATCATGT CGAGAAATAACGCAGATACAGGCAGAGTTCTTGCCTTACCAGAGCACAAG AAGAAGCGCAAGGGAAACTTGCCAGCCGAGTCCGTTAAGATCCTCCGCGA CTGGATGTATAAGCATCGGTTTAAGGCCTACCCTTCAGAAGAAGAGAAGC AAATGCTGTCAGAGAAGACCAATTTGTCTTTGTTGCGGATTTCTAACTGG TTTATCAATGCTCGCAGACGCATTCTCCCGGATATGCTTCAACAGCGTAG AAACGACCCCATCATTGGCCACAAAACGGGCAAAGATGCCCATGCCACCC ACCTGCAGAGCACCGAGGCGTCTGTGCCGGCCAAGTCAGGGCCAGTGGTC CAGACAATGTACAAAGCCTGCCCCTGTGGCCCTTGCCAAAGGGCCAGATG TCAAGAGAGAAGCAACCAGATCCGGAGTCGGCCCCTAGCCAGAAGCTCAC CGGAA	chrY	3574067	3585041
a0002c0002	0/0	555	1	1	0	0	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	ATGGA others(550): Show ATGGAGGCCGCTGCAGACGGCCCGGCTGAGACCCAAAGCCCGGTGGAAAA AGACAGCCCGGCGAAGACCCAAAGCCCAGCCCAAGACACCTCAATCATGT CGAGAAATAACGCAGATACAGGCAGAGTTCTTGCCTTACCAGAGCACAAG AAGAAGCGCAAGGGAAACTTGCCAGCCGAGTCCGTTAAGATCCTCCGCGA CTGGATGTATAAGCATCGGTATAAGGCCTACCCTTCAGAAGAAGAGAAGC AAATGCTGTCAGAGAAGACCAATTTGTCTTTGTTGCGGATTTCTAACTGG TTTATCAATGCTCGCAGACGCATTCTCCCGGATATGCTTCAACAGCGTAG AAACGACCCCATCATTGGCCACAAAACGGGCAAAGATGCCCATGCCACCC ACCTGCAGAGCACCGAGGCGTCTGTGCCGGCCAAGTCAGGGCCAGTGGTC CAGACAATGTACAAAGCCTGCCCCTGTGGCCCTTGCCAAAGGGCCAGATG TCAAGAGAGAAGCAACCAGATCCGGAGTCGGCCCCTAGCCAGAAGCTCAC CGGAA	chrY	3574067	3585041
a0003c0003	0/0	556	1	0	0	1	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	ATGGA others(551): Show ATGGAGGCCGCTGCAGACGGCCCGGCTGAGACCCAAAGCCCGGTGGAAAA AGACAGCCCGGCGAAGACCCAAAGCCCAGCCCAAGACACCTCAATCATGT CGAGAAATAACGCAGATACAGGCAGAGTTCTTGCCTTACCAGAGCACAAG AAGAAGCGCAAGGGAAACTTGCCAGCCGAGTCCGTTAAGATCCTCCGCGA CTGGATGTATAAGCATCGGTTTAAGGCCTACCCTTCAGAAGAAGAGAAGC AAATGCTGTCAGAGAAGACCAATTTGTCTTTGTTGCGGATTTCTAACTGG TTTATCAATGCTCGCAGACGCATTCTCCCGGATATGCTTCAACAGCGTAG AAACGACCCCATCATTGGCCACAAAACGGGCAAAGATGCCCCATGCCACC CACCTGCAGAGCACCGAGGCGTCTGTGCCGGCCAAGTCAGGGCCAGTGGT CCAGACAATGTACAAAGCCTGCCCCTGTGGCCCTTGCCAAAGGGCCAGAT GTCAAGAGAGAAGCAACCAGATCCGGAGTCGGCCCCTAGCCAGAAGCTCA CCGGAA	chrY	3574067	3585041

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	879	129	16	20	70	5	16	TGIF2LY_chrY_3574067_3585041	TGIF2LY	AACCA others(874): Show AACCAGCTCGGCTGTTAGCAACTCTGTTAGCAAAGCTGTTTGTCTTTCTC GGAAACAACAGTAACGATAAGCCTCTTTGAATATGGAGGCCGCTGCAGAC GGCCCGGCTGAGACCCAAAGCCCGGTGGAAAAAGACAGCCCGGCGAAGAC CCAAAGCCCAGCCCAAGACACCTCAATCATGTCGAGAAATAACGCAGATA CAGGCAGAGTTCTTGCCTTACCAGAGCACAAGAAGAAGCGCAAGGGAAAC TTGCCAGCCGAGTCCGTTAAGATCCTCCGCGACTGGATGTATAAGCATCG GTTTAAGGCCTACCCTTCAGAAGAAGAGAAGCAAATGCTGTCAGAGAAGA CCAATTTGTCTTTGTTGCGGATTTCTAACTGGTTTATCAATGCTCGCAGA CGCATTCTCCCGGATATGCTTCAACAGCGTAGAAACGACCCCATCATTGG CCACAAAACGGGCAAAGATGCCCATGCCACCCACCTGCAGAGCACCGAGG CGTCTGTGCCGGCCAAGTCAGGGCCAGTGGTCCAGACAATGTACAAAGCC TGCCCCTGTGGCCCTTGCCAAAGGGCCAGATGTCAAGAGAGAAGCAACCA GATCCGGAGTCGGCCCCTAGCCAGAAGCTCACCGGAATAGCCCAGCCAAA GAAAAAGGTCAAGATTTCTATCACTTCCCCGTCTTCTCCAGAACTTGTGT CTCCAGAGGAGTACGCCGACTTCAGCAGCTTCCTGCTGCTAGTCGATGCA GCAGTACAAACGGCTGCCGAGCTGGAGCTAGAGAAGAAGCAAGAGCCTAA TCCATGATTGATGATGTTCCAAAAACCCAAGTAGTCAGTCCCTTGTGTAC TGTGGTAAACCTGTTTATGTTCACCCCAA	chrY	3574067	3585041
a0002c0002t0001	0/0	879	1	1	0	0	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	AACCA others(874): Show AACCAGCTCGGCTGTTAGCAACTCTGTTAGCAAAGCTGTTTGTCTTTCTC GGAAACAACAGTAACGATAAGCCTCTTTGAATATGGAGGCCGCTGCAGAC GGCCCGGCTGAGACCCAAAGCCCGGTGGAAAAAGACAGCCCGGCGAAGAC CCAAAGCCCAGCCCAAGACACCTCAATCATGTCGAGAAATAACGCAGATA CAGGCAGAGTTCTTGCCTTACCAGAGCACAAGAAGAAGCGCAAGGGAAAC TTGCCAGCCGAGTCCGTTAAGATCCTCCGCGACTGGATGTATAAGCATCG GTATAAGGCCTACCCTTCAGAAGAAGAGAAGCAAATGCTGTCAGAGAAGA CCAATTTGTCTTTGTTGCGGATTTCTAACTGGTTTATCAATGCTCGCAGA CGCATTCTCCCGGATATGCTTCAACAGCGTAGAAACGACCCCATCATTGG CCACAAAACGGGCAAAGATGCCCATGCCACCCACCTGCAGAGCACCGAGG CGTCTGTGCCGGCCAAGTCAGGGCCAGTGGTCCAGACAATGTACAAAGCC TGCCCCTGTGGCCCTTGCCAAAGGGCCAGATGTCAAGAGAGAAGCAACCA GATCCGGAGTCGGCCCCTAGCCAGAAGCTCACCGGAATAGCCCAGCCAAA GAAAAAGGTCAAGATTTCTATCACTTCCCCGTCTTCTCCAGAACTTGTGT CTCCAGAGGAGTACGCCGACTTCAGCAGCTTCCTGCTGCTAGTCGATGCA GCAGTACAAACGGCTGCCGAGCTGGAGCTAGAGAAGAAGCAAGAGCCTAA TCCATGATTGATGATGTTCCAAAAACCCAAGTAGTCAGTCCCTTGTGTAC TGTGGTAAACCTGTTTATGTTCACCCCAA	chrY	3574067	3585041
a0003c0003t0002	0/0	881	1	0	0	1	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	AACCA others(876): Show AACCAGCTCGGCTGTTAGCAACTCTGTTAGCAAAGCTGTTTGTCTTTCTC GGAAACAACAGTAACGATAAGCCTCTTTGAATATGGAGGCCGCTGCAGAC GGCCCGGCTGAGACCCAAAGCCCGGTGGAAAAAGACAGCCCGGCGAAGAC CCAAAGCCCAGCCCAAGACACCTCAATCATGTCGAGAAATAACGCAGATA CAGGCAGAGTTCTTGCCTTACCAGAGCACAAGAAGAAGCGCAAGGGAAAC TTGCCAGCCGAGTCCGTTAAGATCCTCCGCGACTGGATGTATAAGCATCG GTTTAAGGCCTACCCTTCAGAAGAAGAGAAGCAAATGCTGTCAGAGAAGA CCAATTTGTCTTTGTTGCGGATTTCTAACTGGTTTATCAATGCTCGCAGA CGCATTCTCCCGGATATGCTTCAACAGCGTAGAAACGACCCCATCATTGG CCACAAAACGGGCAAAGATGCCCCATGCCACCCACCTGCAGAGCACCGAG GCGTCTGTGCCGGCCAAGTCAGGGCCAGTGGTCCAGACAATGTACAAAGC CTGCCCCTGTGGCCCTTGCCAAAGGGCCAGATGTCAAGAGAGAAGCAACC AGATCCGGAGTCGGCCCCTAGCCAGAAGCTCACCGGAATAGCCCAGCCAA AGAAAAAAGGTCAAGATTTCTATCACTTCCCCGTCTTCTCCAGAACTTGT GTCTCCAGAGGAGTACGCCGACTTCAGCAGCTTCCTGCTGCTAGTCGATG CAGCAGTACAAACGGCTGCCGAGCTGGAGCTAGAGAAGAAGCAAGAGCCT AATCCATGATTGATGATGTTCCAAAAACCCAAGTAGTCAGTCCCTTGTGT ACTGTGGTAAACCTGTTTATGTTCACCCCAA	chrY	3574067	3585041

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	87	16	20	29	4	16	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
a0001c0001t0001g0002	0/0	42	0	0	41	1	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
a0002c0002t0001g0001	0/0	1	1	0	0	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
a0003c0003t0002g0002	0/0	1	0	0	1	0	0	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG00280	hp1	a0001	c0001	t0001	g0002	EUR	FIN	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG00609	hp1	a0001	c0001	t0001	g0002	EAS	CHS	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG00621	hp1	a0001	c0001	t0001	g0002	EAS	CHS	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG00673	hp1	a0001	c0001	t0001	g0002	EAS	CHS	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02015	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02027	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02056	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02071	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02074	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02083	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02129	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02135	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03225	hp1	a0002	c0002	t0001	g0001	AFR	MSL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18747	hp1	a0001	c0001	t0001	g0002	EAS	CHB	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18943	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18945	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18953	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18959	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18962	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18965	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18977	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18982	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18984	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18985	hp1	a0003	c0003	t0002	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18986	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18990	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18994	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19000	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19005	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19007	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19009	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19055	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19060	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19062	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19066	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19067	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19070	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19072	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19075	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19076	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19083	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19085	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19086	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19088	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
homoSapiens	chm13v2	a0001	c0001	t0001	g0001	REF	REF	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041
homoSapiens	grch38p0	a0001	c0001	t0001	g0001	REF	REF	TGIF2LY_chrY_3574067_3585041	TGIF2LY	chrY	3574067	3585041

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:3579465	T T	A A	1	a0002 a0002	1	HG03225.hp1 HG03225.hp1	missense_variant	MODERATE	c.221T>A c.221T>A	p.Phe74Tyr p.Phe74Tyr	TGIF2LY	ENSG00000176679.9	transcript	ENST00000321217.5	protein_coding	2/2	303/879	221/558	74/185			chrY	3579465
	chrY:3579632	G G	GC GC	1	a0003 a0003	1	NA18985.hp1 NA18985.hp1	frameshift_variant	HIGH	c.391dupC c.391dupC	p.His131fs p.His131fs	TGIF2LY	ENSG00000176679.9	transcript	ENST00000321217.5	protein_coding	2/2	474/879	392/558	131/185		INFO_REALIGN_3_PRIME	chrY	3579632

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:3579813	G G	GA GA	1	a0003c0003t0002 a0003c0003t0002	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.16dupA c.16dupA		TGIF2LY	ENSG00000176679.9	transcript	ENST00000321217.5	protein_coding	2/2				17	INFO_REALIGN_3_PRIME	chrY	3579813

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:3579204	G G	T T	2	a0001c0001t0001g0002 a0003c0003t0002g0002 a0001c0001t0001g0002 a0003c0003t0002g0002	43	HG00280.hp1 HG00609.hp1 HG00621.hp1 others(40): Show HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 NA18747.hp1 NA18943.hp1 NA18945.hp1 NA18953.hp1 NA18959.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19055.hp1 NA19060.hp1 NA19062.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-21-20G>T c.-21-20G>T		TGIF2LY	ENSG00000176679.9	transcript	ENST00000321217.5	protein_coding	1/1						chrY	3579204

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TGIF2LY_chrY_3574067_3585041 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 3)

Coding Level Haplotype Info (Total: 3)

Transcript Level Haplotype Info (Total: 3)

Genebody Level Haplotype Info (Total: 4)

Haplotype Details by Sample (Haploid Level) (Total: 131)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 1)

Annotation (Repeats)

Annotation (SNP Array)