JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THSD8_chr19_12797069_12809389	0/0	a0005	115	1	0	1	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	a0006	115	1	1	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THTPA_chr14_23551271_23565271	1/0	a0001	230	321	96	54	127	12	31	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/1	a0002	230	81	2	14	51	4	9	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	a0003	230	2	2	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THUMPD1_chr16_20728664_20746818	1/1	a0001	353	351	82	63	158	13	33	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	a0002	353	56	8	4	34	1	9	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	a0003	353	2	2	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	a0004	353	1	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD2_chr2_39731061_39784258	1/1	a0001	503	318	82	57	133	11	33	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0002	502	6	6	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0003	503	3	2	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0004	503	3	0	0	0	0	3	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0005	503	2	2	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0006	503	2	2	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0007	503	1	0	1	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0008	333	1	0	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0009	503	1	0	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	a0010	503	1	0	0	0	1	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD3_chr3_9358054_9391791	1/1	a0001	507	337	90	54	149	10	32	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	a0002	507	36	3	11	14	2	6	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	a0003	507	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	a0004	507	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	a0005	507	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	a0006	507	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	a0007	507	1	0	1	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THY1_chr11_119410476_119428172	1/1	a0001	161	381	91	72	158	18	40	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	a0002	161	2	0	0	2	0	0	copy fasta	THY1	chr11	119410476	119428172
THY1_chr11_119410476_119428172	0/0	a0003	161	1	1	0	0	0	0	copy fasta	THY1	chr11	119410476	119428172
THYN1_chr11_134243282_134258352	0/0	a0001	225	456	96	84	214	18	44	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	a0002	225	1	1	0	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
THYN1_chr11_134243282_134258352	0/0	a0003	225	1	1	0	0	0	0	copy fasta	THYN1	chr11	134243282	134258352
TH_chr11_2158929_2176815	1/1	a0001	497	195	78	44	45	12	14	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	a0002	497	187	10	31	112	6	28	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	a0003	497	2	0	1	1	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	a0004	497	1	0	0	0	0	1	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	a0005	497	1	0	1	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	a0006	497	1	0	1	0	0	0	copy fasta	TH	chr11	2158929	2176815
TH_chr11_2158929_2176815	0/0	a0007	497	1	0	0	0	0	1	copy fasta	TH	chr11	2158929	2176815
TIA1_chr2_70204444_70253628	1/1	a0001	386	389	96	66	176	10	39	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	a0002	386	3	2	1	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	a0003	386	1	0	1	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	a0004	386	1	0	0	0	0	1	copy fasta	TIA1	chr2	70204444	70253628
TIAL1_chr10_119568465_119601964	1/1	a0001	375	397	94	60	186	12	43	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	a0002	375	1	0	0	0	0	1	copy fasta	TIAL1	chr10	119568465	119601964
TIAM1_chr21_31113418_31349261	1/0	a0001	1591	151	64	31	31	4	20	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0002	1591	33	1	5	16	0	11	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0003	1591	18	15	1	2	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0004	1591	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0005	1591	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261