JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TM2D1_chr1_61676046_61730141	0/0	a0002	207	3	3	0	0	0	0	copy fasta	TM2D1	chr1	61676046	61730141
TM2D2_chr8_38983808_39001509	1/1	a0001	214	431	94	78	195	16	46	copy fasta	TM2D2	chr8	38983808	39001509
TM2D2_chr8_38983808_39001509	0/0	a0002	214	1	0	0	1	0	0	copy fasta	TM2D2	chr8	38983808	39001509
TM2D3_chr15_101636848_101657381	0/1	a0001	247	413	98	78	180	16	40	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	1/0	a0002	247	4	0	0	0	0	3	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	a0003	247	4	0	4	0	0	0	copy fasta	TM2D3	chr15	101636848	101657381
TM2D3_chr15_101636848_101657381	0/0	a0004	247	1	0	0	0	0	1	copy fasta	TM2D3	chr15	101636848	101657381
TM4SF18_chr3_149313498_149338636	1/1	a0001	201	442	88	72	216	18	46	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF19_chr3_196318547_196343388	0/1	a0001	209	242	34	36	127	9	35	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	1/0	a0002	209	114	48	33	19	3	10	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	a0003	209	10	2	4	0	4	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	a0004	209	1	0	0	1	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	a0005	209	1	0	0	0	0	1	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	a0006	209	1	0	1	0	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	a0007	209	1	0	0	1	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF1_chr3_149364022_149382649	1/1	a0001	202	434	94	84	188	18	48	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF20_chr2_227357038_227384306	1/1	a0001	229	334	85	63	139	9	36	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0002	229	60	0	2	48	2	8	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0003	229	37	0	4	27	5	1	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0004	229	30	9	1	18	0	2	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0005	229	3	0	2	0	0	1	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0006	229	3	0	0	3	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0007	83	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0008	229	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	a0009	229	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF4_chr3_149469697_149508394	1/1	a0001	202	415	93	67	191	16	46	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	a0002	202	2	1	1	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	a0003	202	2	2	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	a0004	202	1	0	0	1	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF5_chr17_4766886_4788211	1/1	a0001	197	452	92	72	220	18	48	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	a0002	197	2	2	0	0	0	0	copy fasta	TM4SF5	chr17	4766886	4788211
TM6SF1_chr15_83102645_83142408	1/1	a0001	370	269	90	55	86	7	29	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	a0002	370	12	0	6	0	2	4	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	a0003	370	5	0	3	0	1	1	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	a0004	370	4	0	0	4	0	0	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF2_chr19_19259366_19278301	1/0	a0001	377	359	91	62	147	15	43	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0002	377	27	3	6	13	2	3	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0003	377	3	0	3	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0004	377	2	0	1	0	1	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0005	377	1	0	1	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/1	a0006	377	1	0	0	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0007	377	1	0	1	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0008	377	1	0	0	1	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	a0009	358	1	0	0	1	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM7SF2_chr11_65106872_65121230	1/0	a0001	418	228	61	35	97	7	27	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/1	a0002	418	127	29	34	46	8	9	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	a0003	418	15	0	3	9	1	2	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	a0004	418	4	0	0	4	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	a0005	418	4	4	0	0	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	a0006	418	1	0	0	0	0	1	copy fasta	TM7SF2	chr11	65106872	65121230