JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM198_chr2_219539028_219555595	0/0	a0007	360	1	0	1	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0008	360	1	0	0	0	0	1	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0009	360	1	1	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM199_chr17_28352647_28368683	1/1	a0001	208	285	67	75	87	13	41	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	a0002	208	58	0	3	50	1	4	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	a0003	208	14	14	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	a0004	208	10	10	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	a0005	208	3	3	0	0	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	a0006	208	1	0	0	0	0	1	copy fasta	TMEM199	chr17	28352647	28368683
TMEM199_chr17_28352647_28368683	0/0	a0007	208	1	0	0	1	0	0	copy fasta	TMEM199	chr17	28352647	28368683
TMEM19_chr12_71681082_71710047	1/1	a0001	336	382	86	58	177	16	43	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	a0002	336	9	9	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	a0003	279	2	0	0	2	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	a0004	336	1	0	0	0	0	1	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	a0005	336	1	0	0	1	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM19_chr12_71681082_71710047	0/0	a0006	336	1	1	0	0	0	0	copy fasta	TMEM19	chr12	71681082	71710047
TMEM200A_chr6_130361017_130448067	1/1	a0001	491	308	77	55	133	8	33	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	a0002	491	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	a0003	491	1	0	1	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	a0004	491	1	0	0	0	0	1	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	a0005	491	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	a0006	491	1	1	0	0	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200A_chr6_130361017_130448067	0/0	a0007	491	1	0	0	1	0	0	copy fasta	TMEM200A	chr6	130361017	130448067
TMEM200B_chr1_29114429_29128903	1/1	a0001	307	405	93	78	175	15	42	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	a0002	307	1	0	0	0	0	1	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	a0003	307	1	0	0	0	1	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	a0004	307	1	0	0	1	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	a0005	307	1	0	0	0	0	1	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200B_chr1_29114429_29128903	0/0	a0006	307	1	1	0	0	0	0	copy fasta	TMEM200B	chr1	29114429	29128903
TMEM200C_chr18_5877072_5900522	1/1	a0001	621	381	79	70	171	15	44	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0002	621	14	10	4	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0003	621	10	1	5	0	1	3	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0004	621	10	0	3	7	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0005	621	5	0	0	5	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0006	617	3	1	0	0	0	2	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0007	621	2	2	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0008	616	2	0	0	2	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0009	532	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0010	625	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0011	621	1	0	0	0	0	1	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0012	621	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0013	621	1	0	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0014	621	1	1	0	0	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0015	621	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0016	621	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0017	621	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0018	614	1	0	0	1	0	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM200C_chr18_5877072_5900522	0/0	a0019	612	1	0	0	0	1	0	copy fasta	TMEM200C	chr18	5877072	5900522
TMEM201_chr1_9583911_9619877	0/1	a0001	666	186	38	32	84	6	25	copy fasta	TMEM201	chr1	9583911	9619877
TMEM201_chr1_9583911_9619877	1/0	a0002	666	125	26	14	66	4	14	copy fasta	TMEM201	chr1	9583911	9619877