JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNFRSF25_chr1_6455786_6471173	0/0	a0005	417	1	0	0	1	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	a0006	417	1	0	0	1	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF4_chr1_1206340_1219153	1/1	a0001	277	403	99	63	181	18	40	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	a0002	277	2	1	1	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	a0003	277	1	0	0	1	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF6B_chr20_63691652_63703684	1/0	a0001	300	30	14	7	2	2	4	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	0/0	a0002	300	2	2	0	0	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF6B_chr20_63691652_63703684	0/0	a0003	300	1	0	1	0	0	0	copy fasta	TNFRSF6B	chr20	63691652	63703684
TNFRSF8_chr1_12058303_12149207	1/1	a0001	595	316	77	63	121	14	39	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0002	595	33	16	1	15	0	1	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0003	595	5	0	0	4	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0004	595	2	0	0	2	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0005	595	1	0	1	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0006	595	1	0	1	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0007	595	1	0	0	0	1	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0008	595	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0009	595	1	0	0	1	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF8_chr1_12058303_12149207	0/0	a0010	595	1	1	0	0	0	0	copy fasta	TNFRSF8	chr1	12058303	12149207
TNFRSF9_chr1_7910871_7945839	1/1	a0001	255	378	88	70	170	18	30	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	a0002	255	4	4	0	0	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	a0003	255	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFRSF9_chr1_7910871_7945839	0/0	a0004	255	1	0	0	1	0	0	copy fasta	TNFRSF9	chr1	7910871	7945839
TNFSF10_chr3_172500508_172528430	1/1	a0001	281	412	75	77	200	17	41	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	a0002	281	17	16	1	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	a0003	281	5	5	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	a0004	281	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	a0005	281	1	0	0	0	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	a0006	57	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	a0007	281	1	0	0	0	1	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF11_chr13_42569152_42613013	1/1	a0001	317	406	84	73	204	11	32	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	a0002	317	2	1	1	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	a0003	317	1	1	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	a0004	317	1	0	0	0	1	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF12_chr17_7544058_7562881	1/1	a0001	249	436	96	82	192	16	48	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF13B_chr13_108264718_108313478	1/1	a0001	285	383	90	77	160	18	36	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	a0002	285	1	0	1	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13_chr17_7553750_7566601	1/0	a0001	250	177	72	26	58	4	16	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/1	a0002	250	166	22	42	67	10	24	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	a0003	250	89	0	10	71	2	6	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	a0004	250	7	4	2	1	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	a0005	250	1	0	0	1	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF14_chr19_6656253_6675160	0/1	a0001	240	434	96	75	194	18	50	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	1/0	a0002	240	27	0	5	21	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	a0003	240	3	0	0	3	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	a0004	240	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	a0005	240	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF15_chr9_114779652_114811039	1/1	a0001	251	397	86	78	173	14	44	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	a0002	251	12	3	0	9	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	a0003	251	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF18_chr1_173034202_173055941	1/1	a0001	177	344	86	79	126	15	36	copy fasta	TNFSF18	chr1	173034202	173055941