Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	8771
ensemblid	ENSG00000243509.6
hgncid	11921
symbol	TNFRSF6B
name	TNF receptor superfamily member 6b
refseq_nuc	NM_003823.4
refseq_prot	NP_003814.1
ensembl_nuc	ENST00000369996.3
ensembl_prot	ENSP00000359013.1
mane_status	MANE Select
chr	chr20
start	63696652
end	63698684
strand	+
ver	v1.2
region	chr20:63696652-63698684
region5000	chr20:63691652-63703684
regionname0	TNFRSF6B_chr20_63696652_63698684
regionname5000	TNFRSF6B_chr20_63691652_63703684

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	300	30	14	7	2	2	4	2	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	MRALE others(295): Show MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCA QCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREE EARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQC QPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFP LSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPEGWGPTPRAGR AALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH	chr20	63691652	63703684
a0002	0/0	300	2	2	0	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	MRALE others(295): Show MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWQDAETGERLVCA QCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREE EARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQC QPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFP LSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPEGWGPTPRAGR AALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH	chr20	63691652	63703684
a0003	0/0	300	1	0	1	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	MRALE others(295): Show MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCA QCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREE EARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQC QPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFP LSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPEGWGPTPRAGR AALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVHERFLPVH	chr20	63691652	63703684

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	900	29	14	7	1	2	4	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	ATGAG others(895): Show ATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGCTGTGCCTGGTGTTGGC GCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGCGGAGTGGCAGAAACAC CCACCTACCCCTGGCGGGACGCAGAGACAGGGGAGCGGCTGGTGTGCGCC CAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGTGCCGCCGAGACAGCCC CACGACGTGTGGCCCGTGTCCACCGCGCCACTACACGCAGTTCTGGAACT ACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTGCGGGGAGCGTGAGGAG GAGGCACGGGCTTGCCACGCCACCCACAACCGTGCCTGCCGCTGCCGCAC CGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAGCACGCATCGTGTCCAC CTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAGCCAGAACACGCAGTGC CAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCAGCTCCAGCTCAGAGCA GTGCCAGCCCCACCGCAACTGCACGGCCCTGGGCCTGGCCCTCAATGTGC CAGGCTCTTCCTCCCATGACACCCTGTGCACCAGCTGCACTGGCTTCCCC CTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTGAGCGTGCCGTCATCGA CTTTGTGGCTTTCCAGGACATCTCCATCAAGAGGCTGCAGCGGCTGCTGC AGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGACACCAAGGGCGGGCCGC GCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCACGGAGCTCCTGGGGGC GCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAGGCGCTGCGCGTGGCCA GGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCGCTTCCTCCCTGTGCAC	chr20	63691652	63703684
a0001c0004	0/0	900	1	0	0	1	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	ATGAG others(895): Show ATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGCTGTGCCTGGTGTTGGC GCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGCGGAGTGGCAGAAACAC CCACCTACCCCTGGCGGGACGCAGAGACAGGGGAGCGGCTGGTGTGTGCC CAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGTGCCGCCGAGACAGCCC CACGACGTGTGGCCCGTGTCCACCGCGCCACTACACGCAGTTCTGGAACT ACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTGCGGGGAGCGTGAGGAG GAGGCACGGGCTTGCCACGCCACCCACAACCGCGCCTGCCGCTGCCGCAC CGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAGCACGCATCGTGTCCAC CTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAGCCAGAACACGCAGTGC CAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCAGTTCCAGCTCAGAGCA GTGCCAGCCCCACCGCAACTGCACGGCCCTGGGCCTGGCCCTCAATGTGC CAGGCTCTTCCTCCCATGACACGCTGTGCACCAGCTGCACTGGCTTCCCC CTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTGAGCGTGCCGTCATCGA CTTTGTGGCTTTCCAGGACATCTCCATCAAGAGGCTGCAGCGGCTGCTGC AGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGACACCAAGGGCGGGCCGC GCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCACGGAGCTCCTGGGGGC GCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAGGCGCTGCGCGTGGCCA GGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCGCTTCCTCCCTGTGCAC	chr20	63691652	63703684
a0002c0002	0/0	900	2	2	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	ATGAG others(895): Show ATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGCTGTGCCTGGTGTTGGC GCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGCGGAGTGGCAGAAACAC CCACCTACCCCTGGCAGGACGCAGAGACAGGGGAGCGGCTGGTGTGCGCC CAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGTGCCGCCGAGACAGCCC CACGACGTGTGGCCCGTGTCCACCGCGCCACTACACGCAGTTCTGGAACT ACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTGCGGGGAGCGTGAGGAG GAGGCACGGGCTTGCCACGCCACCCACAACCGTGCCTGCCGCTGCCGCAC CGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAGCACGCATCGTGTCCAC CTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAGCCAGAACACGCAGTGC CAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCAGCTCCAGCTCAGAGCA GTGCCAGCCCCACCGCAACTGCACGGCCCTGGGCCTGGCCCTCAATGTGC CAGGCTCTTCCTCCCATGACACCCTGTGCACCAGCTGCACTGGCTTCCCC CTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTGAGCGTGCCGTCATCGA CTTTGTGGCTTTCCAGGACATCTCCATCAAGAGGCTGCAGCGGCTGCTGC AGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGACACCAAGGGCGGGCCGC GCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCACGGAGCTCCTGGGGGC GCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAGGCGCTGCGCGTGGCCA GGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCGCTTCCTCCCTGTGCAC	chr20	63691652	63703684
a0003c0003	0/0	900	1	0	1	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	ATGAG others(895): Show ATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGCTGTGCCTGGTGTTGGC GCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGCGGAGTGGCAGAAACAC CCACCTACCCCTGGCGGGACGCAGAGACAGGGGAGCGGCTGGTGTGCGCC CAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGTGCCGCCGAGACAGCCC CACGACGTGTGGCCCGTGTCCACCGCGCCACTACACGCAGTTCTGGAACT ACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTGCGGGGAGCGTGAGGAG GAGGCACGGGCTTGCCACGCCACCCACAACCGTGCCTGCCGCTGCCGCAC CGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAGCACGCATCGTGTCCAC CTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAGCCAGAACACGCAGTGC CAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCAGCTCCAGCTCAGAGCA GTGCCAGCCCCACCGCAACTGCACGGCCCTGGGCCTGGCCCTCAATGTGC CAGGCTCTTCCTCCCATGACACCCTGTGCACCAGCTGCACTGGCTTCCCC CTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTGAGCGTGCCGTCATCGA CTTTGTGGCTTTCCAGGACATCTCCATCAAGAGGCTGCAGCGGCTGCTGC AGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGACACCAAGGGCGGGCCGC GCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCACGGAGCTCCTGGGGGC GCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAGGCGCTGCGCGTGGCCA GGATGCCCGGGCTGGAGCGGAGCGTCCATGAGCGCTTCCTCCCTGTGCAC	chr20	63691652	63703684

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	1140	28	13	7	1	2	4	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	GGACT others(1135): Show GGACTTGGGCGGCCCCTCCGCAGGCGGACCGGGGGCAAAGGAGGTGGCAT GTCGGTCAGGCACAGCAGGGTCCTGTGTCCGCGCTGAGCCGCGCTCTCCC TGCTCCAGCAAGGACCATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGC TGTGCCTGGTGTTGGCGCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGC GGAGTGGCAGAAACACCCACCTACCCCTGGCGGGACGCAGAGACAGGGGA GCGGCTGGTGTGCGCCCAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGT GCCGCCGAGACAGCCCCACGACGTGTGGCCCGTGTCCACCGCGCCACTAC ACGCAGTTCTGGAACTACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTG CGGGGAGCGTGAGGAGGAGGCACGGGCTTGCCACGCCACCCACAACCGTG CCTGCCGCTGCCGCACCGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAG CACGCATCGTGTCCACCTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAG CCAGAACACGCAGTGCCAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCA GCTCCAGCTCAGAGCAGTGCCAGCCCCACCGCAACTGCACGGCCCTGGGC CTGGCCCTCAATGTGCCAGGCTCTTCCTCCCATGACACCCTGTGCACCAG CTGCACTGGCTTCCCCCTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTG AGCGTGCCGTCATCGACTTTGTGGCTTTCCAGGACATCTCCATCAAGAGG CTGCAGCGGCTGCTGCAGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGAC ACCAAGGGCGGGCCGCGCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCA CGGAGCTCCTGGGGGCGCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAG GCGCTGCGCGTGGCCAGGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCG CTTCCTCCCTGTGCACTGATCCTGGCCCCCTCTTATTTATTCTACATCCT TGGCACCCCACTTGCACTGAAAGAGGCTTTTTTTTAAATAGAAGAAATGA GGTTTCTTAAAGCTTATTTTTATAAAGCTTTTTCATAAAA	chr20	63691652	63703684
a0001c0001t0002	0/0	1139	1	1	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	GGACT others(1134): Show GGACTTGGGCGGCCCCTCCGCAGGCGGACCGGGGGCAAAGGAGGTGGCAT GTCGGTCAGGCACAGCAGGGTCCTGTGTCCGCGCTGAGCCGCGCTCTCCC TGCTCCAGCAAGGACCATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGC TGTGCCTGGTGTTGGCGCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGC GGAGTGGCAGAAACACCCACCTACCCCTGGCGGGACGCAGAGACAGGGGA GCGGCTGGTGTGCGCCCAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGT GCCGCCGAGACAGCCCCACGACGTGTGGCCCGTGTCCACCGCGCCACTAC ACGCAGTTCTGGAACTACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTG CGGGGAGCGTGAGGAGGAGGCACGGGCTTGCCACGCCACCCACAACCGTG CCTGCCGCTGCCGCACCGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAG CACGCATCGTGTCCACCTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAG CCAGAACACGCAGTGCCAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCA GCTCCAGCTCAGAGCAGTGCCAGCCCCACCGCAACTGCACGGCCCTGGGC CTGGCCCTCAATGTGCCAGGCTCTTCCTCCCATGACACCCTGTGCACCAG CTGCACTGGCTTCCCCCTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTG AGCGTGCCGTCATCGACTTTGTGGCTTTCCAGGACATCTCCATCAAGAGG CTGCAGCGGCTGCTGCAGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGAC ACCAAGGGCGGGCCGCGCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCA CGGAGCTCCTGGGGGCGCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAG GCGCTGCGCGTGGCCAGGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCG CTTCCTCCCTGTGCACTGATCCTGGCCCCCTCTTATTTATTCTACATCCT TGGCACCCCACTTGCACTGAAAGAGGCTTTTTTTTAAATAGAAGAAATGA GGTTTCTTAAAGCTTATTTTATAAAGCTTTTTCATAAAA	chr20	63691652	63703684
a0001c0004t0001	0/0	1140	1	0	0	1	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	GGACT others(1135): Show GGACTTGGGCGGCCCCTCCGCAGGCGGACCGGGGGCAAAGGAGGTGGCAT GTCGGTCAGGCACAGCAGGGTCCTGTGTCCGCGCTGAGCCGCGCTCTCCC TGCTCCAGCAAGGACCATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGC TGTGCCTGGTGTTGGCGCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGC GGAGTGGCAGAAACACCCACCTACCCCTGGCGGGACGCAGAGACAGGGGA GCGGCTGGTGTGTGCCCAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGT GCCGCCGAGACAGCCCCACGACGTGTGGCCCGTGTCCACCGCGCCACTAC ACGCAGTTCTGGAACTACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTG CGGGGAGCGTGAGGAGGAGGCACGGGCTTGCCACGCCACCCACAACCGCG CCTGCCGCTGCCGCACCGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAG CACGCATCGTGTCCACCTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAG CCAGAACACGCAGTGCCAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCA GTTCCAGCTCAGAGCAGTGCCAGCCCCACCGCAACTGCACGGCCCTGGGC CTGGCCCTCAATGTGCCAGGCTCTTCCTCCCATGACACGCTGTGCACCAG CTGCACTGGCTTCCCCCTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTG AGCGTGCCGTCATCGACTTTGTGGCTTTCCAGGACATCTCCATCAAGAGG CTGCAGCGGCTGCTGCAGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGAC ACCAAGGGCGGGCCGCGCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCA CGGAGCTCCTGGGGGCGCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAG GCGCTGCGCGTGGCCAGGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCG CTTCCTCCCTGTGCACTGATCCTGGCCCCCTCTTATTTATTCTACATCCT TGGCACCCCACTTGCACTGAAAGAGGCTTTTTTTTAAATAGAAGAAATGA GGTTTCTTAAAGCTTATTTTTATAAAGCTTTTTCATAAAA	chr20	63691652	63703684
a0002c0002t0002	0/0	1139	2	2	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	GGACT others(1134): Show GGACTTGGGCGGCCCCTCCGCAGGCGGACCGGGGGCAAAGGAGGTGGCAT GTCGGTCAGGCACAGCAGGGTCCTGTGTCCGCGCTGAGCCGCGCTCTCCC TGCTCCAGCAAGGACCATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGC TGTGCCTGGTGTTGGCGCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGC GGAGTGGCAGAAACACCCACCTACCCCTGGCAGGACGCAGAGACAGGGGA GCGGCTGGTGTGCGCCCAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGT GCCGCCGAGACAGCCCCACGACGTGTGGCCCGTGTCCACCGCGCCACTAC ACGCAGTTCTGGAACTACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTG CGGGGAGCGTGAGGAGGAGGCACGGGCTTGCCACGCCACCCACAACCGTG CCTGCCGCTGCCGCACCGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAG CACGCATCGTGTCCACCTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAG CCAGAACACGCAGTGCCAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCA GCTCCAGCTCAGAGCAGTGCCAGCCCCACCGCAACTGCACGGCCCTGGGC CTGGCCCTCAATGTGCCAGGCTCTTCCTCCCATGACACCCTGTGCACCAG CTGCACTGGCTTCCCCCTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTG AGCGTGCCGTCATCGACTTTGTGGCTTTCCAGGACATCTCCATCAAGAGG CTGCAGCGGCTGCTGCAGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGAC ACCAAGGGCGGGCCGCGCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCA CGGAGCTCCTGGGGGCGCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAG GCGCTGCGCGTGGCCAGGATGCCCGGGCTGGAGCGGAGCGTCCGTGAGCG CTTCCTCCCTGTGCACTGATCCTGGCCCCCTCTTATTTATTCTACATCCT TGGCACCCCACTTGCACTGAAAGAGGCTTTTTTTTAAATAGAAGAAATGA GGTTTCTTAAAGCTTATTTTATAAAGCTTTTTCATAAAA	chr20	63691652	63703684
a0003c0003t0002	0/0	1139	1	0	1	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	GGACT others(1134): Show GGACTTGGGCGGCCCCTCCGCAGGCGGACCGGGGGCAAAGGAGGTGGCAT GTCGGTCAGGCACAGCAGGGTCCTGTGTCCGCGCTGAGCCGCGCTCTCCC TGCTCCAGCAAGGACCATGAGGGCGCTGGAGGGGCCAGGCCTGTCGCTGC TGTGCCTGGTGTTGGCGCTGCCTGCCCTGCTGCCGGTGCCGGCTGTACGC GGAGTGGCAGAAACACCCACCTACCCCTGGCGGGACGCAGAGACAGGGGA GCGGCTGGTGTGCGCCCAGTGCCCCCCAGGCACCTTTGTGCAGCGGCCGT GCCGCCGAGACAGCCCCACGACGTGTGGCCCGTGTCCACCGCGCCACTAC ACGCAGTTCTGGAACTACCTAGAGCGCTGCCGCTACTGCAACGTCCTCTG CGGGGAGCGTGAGGAGGAGGCACGGGCTTGCCACGCCACCCACAACCGTG CCTGCCGCTGCCGCACCGGCTTCTTCGCGCACGCTGGTTTCTGCTTGGAG CACGCATCGTGTCCACCTGGTGCCGGCGTGATTGCCCCGGGCACCCCCAG CCAGAACACGCAGTGCCAGCCGTGCCCCCCAGGCACCTTCTCAGCCAGCA GCTCCAGCTCAGAGCAGTGCCAGCCCCACCGCAACTGCACGGCCCTGGGC CTGGCCCTCAATGTGCCAGGCTCTTCCTCCCATGACACCCTGTGCACCAG CTGCACTGGCTTCCCCCTCAGCACCAGGGTACCAGGAGCTGAGGAGTGTG AGCGTGCCGTCATCGACTTTGTGGCTTTCCAGGACATCTCCATCAAGAGG CTGCAGCGGCTGCTGCAGGCCCTCGAGGCCCCGGAGGGCTGGGGTCCGAC ACCAAGGGCGGGCCGCGCGGCCTTGCAGCTGAAGCTGCGTCGGCGGCTCA CGGAGCTCCTGGGGGCGCAGGACGGGGCGCTGCTGGTGCGGCTGCTGCAG GCGCTGCGCGTGGCCAGGATGCCCGGGCTGGAGCGGAGCGTCCATGAGCG CTTCCTCCCTGTGCACTGATCCTGGCCCCCTCTTATTTATTCTACATCCT TGGCACCCCACTTGCACTGAAAGAGGCTTTTTTTTAAATAGAAGAAATGA GGTTTCTTAAAGCTTATTTTATAAAGCTTTTTCATAAAA	chr20	63691652	63703684

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	23	11	7	1	1	3	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0001c0001t0001g0003	0/0	2	1	0	0	1	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0001c0001t0001g0004	1/0	2	1	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0001c0001t0001g0006	0/0	1	0	0	0	0	1	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0001c0001t0002g0002	0/0	1	1	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0001c0004t0001g0005	0/0	1	0	0	1	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0002c0002t0002g0002	0/0	2	2	0	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
a0003c0003t0002g0007	0/0	1	0	1	0	0	0	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG01106	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG01167	hp1	a0003	c0003	t0002	g0007	AMR	PUR	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02630	hp1	a0002	c0002	t0002	g0002	AFR	GWD	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03139	hp1	a0001	c0001	t0001	g0004	AFR	ESN	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03139	hp2	a0001	c0001	t0002	g0002	AFR	ESN	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03669	hp2	a0001	c0001	t0001	g0006	SAS	PJL	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
NA18906	hp1	a0002	c0002	t0002	g0002	AFR	YRI	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
NA18906	hp2	a0001	c0001	t0001	g0003	AFR	YRI	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
NA18993	hp1	a0001	c0004	t0001	g0005	EAS	JPT	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
NA20752	hp1	a0001	c0001	t0001	g0003	EUR	TSI	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
HG03471	hp2	a0001	c0001	t0001	g0001	AFR	MSL	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684
homoSapiens	grch38p0	a0001	c0001	t0001	g0004	REF	REF	TNFRSF6B_chr20_63691652_63703684	TNFRSF6B	chr20	63691652	63703684

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr20:63696883	G G	A A	1	a0002 a0002	2	HG02630.hp1 NA18906.hp1 HG02630.hp1 NA18906.hp1	missense_variant	MODERATE	c.116G>A c.116G>A	p.Arg39Gln p.Arg39Gln	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	1/3	232/1140	116/903	39/300			chr20	63696883
	chr20:63698538	G G	A A	1	a0003 a0003	1	HG01167.hp1 HG01167.hp1	missense_variant	MODERATE	c.878G>A c.878G>A	p.Arg293His p.Arg293His	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	3/3	994/1140	878/903	293/300			chr20	63698538

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr20:63696914	C C	T T	1	a0001c0004 a0001c0004	1	NA18993.hp1 NA18993.hp1	synonymous_variant	LOW	c.147C>T c.147C>T	p.Cys49Cys p.Cys49Cys	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	1/3	263/1140	147/903	49/300	chr20	63696914
chr20:63697100	T T	C C	1	a0001c0004 a0001c0004	1	NA18993.hp1 NA18993.hp1	synonymous_variant	LOW	c.333T>C c.333T>C	p.Arg111Arg p.Arg111Arg	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	1/3	449/1140	333/903	111/300	chr20	63697100
chr20:63697389	C C	T T	1	a0001c0004 a0001c0004	1	NA18993.hp1 NA18993.hp1	synonymous_variant	LOW	c.486C>T c.486C>T	p.Ser162Ser p.Ser162Ser	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/3	602/1140	486/903	162/300	chr20	63697389
chr20:63697476	C C	G G	1	a0001c0004 a0001c0004	1	NA18993.hp1 NA18993.hp1	synonymous_variant	LOW	c.573C>G c.573C>G	p.Thr191Thr p.Thr191Thr	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/3	689/1140	573/903	191/300	chr20	63697476

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr20:63698660	AT AT	A A	3	a0001c0001t0002 a0002c0002t0002 a0003c0003t0002 a0001c0001t0002 a0002c0002t0002 a0003c0003t0002	4	HG01167.hp1 HG02630.hp1 HG03139.hp2 others(1): Show HG01167.hp1 HG02630.hp1 HG03139.hp2 NA18906.hp1	3_prime_UTR_variant	MODIFIER	c.102delT c.102delT		TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	3/3				102	INFO_REALIGN_3_PRIME	chr20	63698660

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr20:63697587	C C	T T	3	a0001c0001t0002g0002 a0002c0002t0002g0002 a0003c0003t0002g0007 a0001c0001t0002g0002 a0002c0002t0002g0002 a0003c0003t0002g0007	4	HG01167.hp1 HG02630.hp1 HG03139.hp2 others(1): Show HG01167.hp1 HG02630.hp1 HG03139.hp2 NA18906.hp1	intron_variant	MODIFIER	c.619+65C>T c.619+65C>T	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63697587
chr20:63697665	C C	T T	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	HG03669.hp2 HG03669.hp2	intron_variant	MODIFIER	c.619+143C>T c.619+143C>T	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63697665
chr20:63697746	G G	A A	2	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0003	25	HG00642.hp1 HG00642.hp2 HG01106.hp1 others(22): Show HG00642.hp1 HG00642.hp2 HG01106.hp1 HG01106.hp2 HG01167.hp2 HG01361.hp1 HG01361.hp2 HG02451.hp1 HG02451.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03669.hp1 NA18906.hp2 NA18993.hp2 NA20752.hp1 NA20752.hp2	intron_variant	MODIFIER	c.619+224G>A c.619+224G>A	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63697746
chr20:63697813	C C	T T	1	a0001c0001t0001g0003 a0001c0001t0001g0003	2	NA18906.hp2 NA20752.hp1 NA18906.hp2 NA20752.hp1	intron_variant	MODIFIER	c.619+291C>T c.619+291C>T	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63697813
chr20:63697816	G G	A A	1	a0001c0004t0001g0005 a0001c0004t0001g0005	1	NA18993.hp1 NA18993.hp1	intron_variant	MODIFIER	c.619+294G>A c.619+294G>A	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63697816
chr20:63698059	G G	A A	1	a0001c0004t0001g0005 a0001c0004t0001g0005	1	NA18993.hp1 NA18993.hp1	intron_variant	MODIFIER	c.620-221G>A c.620-221G>A	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63698059
chr20:63698114	C C	T T	1	a0003c0003t0002g0007 a0003c0003t0002g0007	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.620-166C>T c.620-166C>T	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding	2/2	chr20	63698114

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TNFRSF6B_chr20_63691652_63703684 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 3)

Coding Level Haplotype Info (Total: 4)

Transcript Level Haplotype Info (Total: 5)

Genebody Level Haplotype Info (Total: 8)

Haplotype Details by Sample (Haploid Level) (Total: 33)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 4)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 7)

Annotation (Repeats)

Annotation (SNP Array)