JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNRC18_chr7_5301811_5428834	0/0	a0100	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC6A_chr16_24724651_24831218	1/1	a0001	1962	261	50	44	133	12	20	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0002	1958	36	6	9	14	0	7	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0003	1962	12	12	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0004	1962	11	10	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0005	1962	6	0	3	3	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0006	1958	5	3	2	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0007	1962	3	0	1	0	0	2	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0008	1962	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0009	1962	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0010	1962	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0011	1955	1	0	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0012	1962	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0013	1958	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0014	1962	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0015	1962	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0016	1962	1	0	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0017	1962	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0018	1962	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0019	1962	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0020	1962	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0021	1962	1	0	0	0	0	1	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0022	1962	1	0	0	1	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0023	1958	1	1	0	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0024	1958	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6A_chr16_24724651_24831218	0/0	a0025	1976	1	0	1	0	0	0	copy fasta	TNRC6A	chr16	24724651	24831218
TNRC6B_chr22_40172925_40340808	1/1	a0001	1833	246	37	38	130	11	28	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0002	1832	44	21	13	2	1	7	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0003	1833	3	0	0	3	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0004	1833	3	2	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0005	1833	2	0	2	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0006	1833	2	2	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0007	1833	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0008	1833	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0009	1833	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0010	1832	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0011	1832	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0012	1832	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0013	1832	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	a0014	1833	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6C_chr17_77953703_78113822	1/1	a0001	1936	211	73	38	75	5	18	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0002	1936	39	9	4	23	1	2	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0003	1455	5	1	1	1	0	2	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0004	1936	3	0	0	3	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0005	1936	2	1	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0006	1936	2	1	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0007	1455	2	0	0	2	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0008	1936	2	1	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0009	1936	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0010	1936	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822