JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TRIM41_chr5_181218281_181240808	1/1	a0001	630	292	67	60	108	17	38	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0002	630	89	22	8	54	0	5	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0003	630	4	4	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0004	630	3	0	0	3	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0005	630	2	2	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0006	635	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0007	630	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0008	630	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0009	630	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0010	630	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0011	630	1	0	0	0	1	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0012	630	1	0	0	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	a0013	630	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM42_chr3_140673064_140706150	0/0	a0001	723	247	68	40	111	3	25	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/1	a0002	723	149	20	31	77	7	13	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0003	723	5	5	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0004	723	2	0	0	2	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0005	723	2	2	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0006	723	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	1/0	a0007	723	1	0	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0008	723	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0009	723	1	0	1	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	a0010	723	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM43B_chr2_95472008_95489754	1/1	a0001	446	401	86	64	200	10	39	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0002	446	5	3	0	2	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0003	446	4	0	0	4	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0004	446	2	2	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0005	446	2	0	0	0	0	2	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0006	446	2	1	0	1	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0007	446	1	0	0	0	0	1	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0008	446	1	0	1	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0009	446	1	1	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0010	446	1	0	0	1	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0011	446	1	0	0	0	0	1	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0012	446	1	0	1	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0013	446	1	1	0	0	0	0	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	0/0	a0014	446	1	0	0	0	0	1	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43_chr2_95587001_95604778	1/0	a0001	446	376	84	73	174	9	35	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0002	446	4	1	1	1	1	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0003	446	3	3	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0004	446	2	0	0	1	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0005	446	2	0	0	0	0	2	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0006	446	1	1	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0007	446	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0008	446	1	1	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/1	a0009	446	1	0	0	0	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0010	446	1	0	0	0	0	1	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0011	446	1	0	0	1	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM43_chr2_95587001_95604778	0/0	a0012	446	1	0	0	1	0	0	copy fasta	TRIM43	chr2	95587001	95604778
TRIM44_chr11_35657775_35823007	1/1	a0001	344	390	94	76	173	14	31	copy fasta	TRIM44	chr11	35657775	35823007