JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSPAN1_chr1_46170087_46190962	1/1	a0001	241	430	99	76	189	18	46	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	a0002	241	2	0	0	2	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	a0003	232	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	a0004	241	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	a0005	241	1	1	0	0	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	a0006	241	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN2_chr1_115043011_115094503	1/1	a0001	221	361	95	62	150	16	36	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	a0002	221	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN31_chr12_57740039_57755219	1/1	a0001	210	372	90	78	142	18	42	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN32_chr11_2297013_2323204	1/1	a0001	320	386	93	75	159	13	44	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0002	320	14	0	0	14	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0003	320	5	0	2	0	1	2	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0004	320	2	2	0	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0005	320	2	0	0	2	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0006	5	1	1	0	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0007	320	1	0	1	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	a0008	320	1	0	0	1	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN33_chr7_129139707_129174699	1/1	a0001	283	431	92	68	207	16	46	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	a0002	283	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN3_chr15_77036404_77076109	1/0	a0001	253	3	0	0	2	0	0	copy fasta	TSPAN3	chr15	77036404	77076109
TSPAN4_chr11_837852_872111	1/1	a0001	238	391	88	70	173	16	42	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	a0002	238	1	0	1	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	a0003	238	1	0	1	0	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN4_chr11_837852_872111	0/0	a0004	238	1	0	0	1	0	0	copy fasta	TSPAN4	chr11	837852	872111
TSPAN5_chr4_98465367_98663611	1/1	a0001	268	236	86	48	68	8	24	copy fasta	TSPAN5	chr4	98465367	98663611
TSPAN6_chrX_100622108_100641806	1/0	a0001	245	307	77	57	134	7	31	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/1	a0002	245	11	1	6	0	2	1	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN7_chrX_38556542_38693918	1/1	a0001	249	222	64	36	87	9	24	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	a0002	211	1	0	0	1	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN8_chr12_71120096_71162999	1/1	a0001	237	274	85	44	104	11	28	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0002	237	89	3	15	53	5	13	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0003	237	36	1	5	28	0	2	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0004	237	9	9	0	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0005	237	2	0	0	0	0	2	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0006	237	2	2	0	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0007	237	1	0	0	1	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	a0008	237	1	0	0	0	0	1	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN9_chr12_3072379_3291559	1/1	a0001	239	287	89	54	96	14	32	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	a0002	239	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPEAR_chr21_44492893_44716572	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	1/0	a0001	669	283	87	59	96	9	31	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0002	669	3	0	1	0	1	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/1	a0003	669	1	0	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0004	669	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0005	669	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0006	669	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0007	669	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0008	669	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	a0009	669	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPO2_chr6_41037467_41049337	1/1	a0001	170	359	96	69	142	12	38	copy fasta	TSPO2	chr6	41037467	41049337