Search by Genic region
Multiple Alignments (by aa haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
| geneid | 10099 |
|---|---|
| ensemblid | ENSG00000140391.15 |
| hgncid | 17752 |
| symbol | TSPAN3 |
| name | tetraspanin 3 |
| refseq_nuc | NM_005724.6 |
| refseq_prot | NP_005715.1 |
| ensembl_nuc | ENST00000267970.9 |
| ensembl_prot | ENSP00000267970.4 |
| mane_status | MANE Select |
| chr | chr15 |
| start | 77041404 |
| end | 77071109 |
| strand | - |
| ver | v1.2 |
| region | chr15:77041404-77071109 |
| region5000 | chr15:77036404-77076109 |
| regionname0 | TSPAN3_chr15_77041404_77071109 |
| regionname5000 | TSPAN3_chr15_77036404_77076109 |
| ahapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 1/0 | 253 | 3 | 0 | 0 | 2 | 0 | 0 | 2 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c0001 | 1/0 | 762 | 2 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| c0002 | 0/0 | 762 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| thapid | grch38chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t0001 | 1/0 | 5587 | 2 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| t0002 | 0/0 | 5587 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| g0002 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| g0003 | 1/0 | 1 | 0 | 0 | 0 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| achapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 1/0 | 762 | 2 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| a0001c0002 | 0/0 | 762 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | 1/0 | 6348 | 2 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| a0001c0002t0002 | 0/0 | 6348 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | copy fasta | chr15 | 77036404 | 77076109 |
| actghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0002 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| a0001c0001t0001g0003 | 1/0 | 1 | 0 | 0 | 0 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| a0001c0002t0002g0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA19067 | hp1 | a0001 | c0002 | t0002 | g0001 | EAS | JPT | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| NA19067 | hp2 | a0001 | c0001 | t0001 | g0002 | EAS | JPT | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| homoSapiens_grch38 | hp1 | a0001 | c0001 | t0001 | g0003 | REF | REF | TSPAN3_chr15_77036404_77076109 | TSPAN3 | chr15 | 77036404 | 77076109 |
| chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|
| chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr15:77052451
|
T | A | 1 | a0001c0002 | 1 | NA19067.hp1 | synonymous_variant | LOW | c.603A>T | p.Val201Val | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 6/7 | 758/6348 | 603/762 | 201/253 | chr15 | 77052451 |
| chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr15:77042435
|
G | A | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*4400C>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 4400 | chr15 | 77042435 | |||||
| chr15:77042446
|
T | C | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*4389A>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 4389 | chr15 | 77042446 | |||||
| chr15:77042525
|
G | A | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*4310C>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 4310 | chr15 | 77042525 | |||||
| chr15:77042691
|
G | A | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*4144C>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 4144 | chr15 | 77042691 | |||||
| chr15:77042922
|
A | G | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*3913T>C | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 3913 | chr15 | 77042922 | |||||
| chr15:77043560
|
A | G | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*3275T>C | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 3275 | chr15 | 77043560 | |||||
| chr15:77045113
|
A | G | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*1722T>C | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 1722 | chr15 | 77045113 | |||||
| chr15:77045822
|
A | C | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*1013T>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 1013 | chr15 | 77045822 | |||||
| chr15:77046442
|
G | C | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 3_prime_UTR_variant | MODIFIER | c.*393C>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 7/7 | 393 | chr15 | 77046442 | |||||
| chr15:77071109
|
T | C | 1 | a0001c0002t0002 | 1 | NA19067.hp1 | 5_prime_UTR_variant | MODIFIER | c.-155A>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/7 | 155 | chr15 | 77071109 |
| chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr15:77047249
|
C | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.670-322G>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 6/6 | chr15 | 77047249 | ||||||
| chr15:77047343
|
G | C | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.670-416C>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 6/6 | chr15 | 77047343 | ||||||
| chr15:77047986
|
A | G | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.670-1059T>C | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 6/6 | chr15 | 77047986 | ||||||
| chr15:77051075
|
T | A | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.669+1310A>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 6/6 | chr15 | 77051075 | ||||||
| chr15:77053451
|
CAAAAAAA others(10): Show |
C | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.433-539_433-523del others(17): Show |
TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 4/6 | chr15 | 77053451 | ||||||
| chr15:77055132
|
A | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.330+657T>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 3/6 | chr15 | 77055132 | ||||||
| chr15:77055999
|
A | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.255+65T>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 2/6 | chr15 | 77055999 | ||||||
| chr15:77057960
|
G | A | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.64-1705C>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77057960 | ||||||
| chr15:77058038
|
C | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.64-1783G>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77058038 | ||||||
| chr15:77059629
|
G | C | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.64-3374C>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77059629 | ||||||
| chr15:77060177
|
T | G | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.64-3922A>C | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77060177 | ||||||
| chr15:77060915
|
A | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.64-4660T>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77060915 | ||||||
| chr15:77061932
|
T | C | 1 | a0001c0001t0001g0002 | 1 | NA19067.hp2 | intron_variant | MODIFIER | c.64-5677A>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77061932 | ||||||
| chr15:77062505
|
C | A | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.64-6250G>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77062505 | ||||||
| chr15:77065071
|
C | T | 2 | a0001c0001t0001g0002a0001c0002t0002g0001 | 2 | NA19067.hp1 NA19067.hp2 |
intron_variant | MODIFIER | c.63+5821G>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77065071 | ||||||
| chr15:77066309
|
C | A | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.63+4583G>T | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77066309 | ||||||
| chr15:77066670
|
T | C | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.63+4222A>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77066670 | ||||||
| chr15:77066981
|
A | C | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.63+3911T>G | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77066981 | ||||||
| chr15:77066983
|
G | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.63+3909C>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77066983 | ||||||
| chr15:77067172
|
T | G | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.63+3720A>C | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77067172 | ||||||
| chr15:77069749
|
C | T | 1 | a0001c0002t0002g0001 | 1 | NA19067.hp1 | intron_variant | MODIFIER | c.63+1143G>A | TSPAN3 | ENSG00000140391.15 | transcript | ENST00000267970.9 | protein_coding | 1/6 | chr15 | 77069749 |