JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC16_chr9_127711079_127736590	0/0	a0023	873	1	0	1	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	a0024	873	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC17_chr11_43353920_43499931	1/1	a0001	1141	271	54	64	101	14	36	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	a0002	1141	21	19	2	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	a0003	1141	2	2	0	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	a0004	1141	1	1	0	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	a0005	1141	1	0	0	1	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	a0006	1141	1	0	0	1	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	a0007	1141	1	0	0	1	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC19_chr17_15994824_16034404	1/1	a0001	380	322	92	67	116	12	33	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	a0002	380	3	3	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	a0003	380	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	a0004	380	1	0	0	0	0	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	a0005	380	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC1_chr5_160004139_160070543	1/1	a0001	292	375	77	62	187	11	36	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	a0002	292	6	2	1	0	1	2	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	a0003	292	1	0	0	1	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	a0004	292	1	0	1	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	a0005	292	1	1	0	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC21A_chr3_39102680_39143900	0/1	a0001	1313	186	18	34	112	4	17	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0002	1313	146	47	27	57	4	11	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0003	1313	26	17	1	5	2	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0004	1313	5	1	2	0	0	2	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0005	1313	4	3	1	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0006	1313	3	0	1	0	1	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0007	1313	3	0	3	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0008	1313	3	3	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0009	1313	2	0	1	0	1	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0010	1313	2	2	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0011	1313	2	2	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0012	1313	2	2	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0013	1313	1	1	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0014	1313	1	0	0	1	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0015	1313	1	0	0	1	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0016	1313	1	0	0	0	0	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0017	1313	1	0	0	0	0	1	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0018	1313	1	0	1	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	1/0	a0019	1313	1	0	0	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21A_chr3_39102680_39143900	0/0	a0020	1313	1	0	1	0	0	0	copy fasta	TTC21A	chr3	39102680	39143900
TTC21B_chr2_165868362_165958776	0/0	a0001	1316	257	54	43	131	5	24	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/1	a0002	1316	82	14	16	37	3	11	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0003	1316	30	0	10	20	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	1/0	a0004	1316	14	11	2	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0005	1316	5	4	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0006	1316	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0007	1316	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0008	1316	2	2	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0009	1316	2	1	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0010	1316	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0011	1316	1	0	1	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776