JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC21B_chr2_165868362_165958776	0/0	a0012	1316	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0013	1316	1	0	0	0	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0014	1316	1	0	0	0	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0015	1316	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0016	1316	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0017	1316	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0018	1316	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0019	1316	1	0	0	1	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0020	1316	1	1	0	0	0	0	copy fasta	TTC21B	chr2	165868362	165958776
TTC21B_chr2_165868362_165958776	0/0	a0021	1316	1	0	0	0	0	1	copy fasta	TTC21B	chr2	165868362	165958776
TTC22_chr1_54774712_54806323	1/1	a0001	569	274	65	42	124	9	32	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0002	569	73	3	17	44	5	4	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0003	569	33	7	5	15	2	4	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0004	569	18	0	0	18	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0005	569	15	1	7	2	2	3	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0006	569	7	0	1	6	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0007	569	5	5	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0008	249	4	0	0	4	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0009	569	3	0	0	2	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0010	569	2	2	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0011	476	2	1	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0012	569	2	1	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0013	569	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0014	569	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0015	569	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0016	325	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0017	569	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0018	569	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0019	569	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0020	569	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0021	569	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0022	569	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0023	569	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	a0024	569	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC23L_chr5_34834164_34905511	1/0	a0001	361	196	2	37	124	8	24	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/1	a0002	361	160	63	37	32	7	20	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0003	361	5	5	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0004	361	5	4	1	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0005	361	5	1	2	2	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0006	361	4	4	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0007	361	3	3	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0008	112	3	0	0	3	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0009	361	3	3	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0010	361	3	2	1	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0011	361	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0012	361	1	0	0	1	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0013	361	1	0	0	0	1	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0014	361	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	a0015	361	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23_chr15_99131323_99254581	1/1	a0001	447	353	80	65	160	11	35	copy fasta	TTC23	chr15	99131323	99254581