JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTC39A_chr1_51282258_51335562	0/0	a0002	577	2	0	0	2	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39B_chr9_15158622_15312216	0/1	a0001	616	189	64	28	67	8	21	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	1/0	a0002	616	60	10	15	14	5	15	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	a0003	616	8	7	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	a0004	112	2	0	2	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	a0005	616	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	a0006	616	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	a0007	616	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39C_chr18_24009754_24140600	1/1	a0001	583	326	91	57	132	10	34	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	a0002	583	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	a0003	583	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC3_chr21_37068254_37208107	0/0	a0001	2025	176	51	37	78	3	7	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	1/1	a0002	2025	72	3	22	30	5	10	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0003	2025	57	17	6	34	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0004	2025	11	9	2	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0005	2025	6	0	2	0	2	2	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0006	2025	3	2	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0007	2025	3	0	2	0	0	1	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0008	2025	3	3	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0009	2025	3	0	1	2	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0010	2025	2	0	0	0	0	2	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0011	2025	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0012	2025	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0013	2025	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	a0014	2025	1	0	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC4_chr1_54710861_54747657	0/1	a0001	387	289	37	46	170	7	28	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	1/0	a0002	387	91	40	29	2	7	12	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	a0003	387	6	6	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	a0004	387	6	6	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	a0005	387	3	0	0	3	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	a0006	387	1	0	1	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	a0007	387	1	1	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	a0008	387	1	0	0	1	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC5_chr14_20281227_20310951	0/1	a0001	440	306	70	58	146	7	24	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	1/0	a0002	440	96	12	15	45	3	20	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	a0003	440	6	6	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	a0004	440	6	6	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	a0005	440	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	a0006	440	1	0	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC6_chr14_37590629_37847717	1/1	a0001	1886	92	35	11	35	4	5	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0002	1886	26	0	1	23	0	2	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0003	1886	23	7	9	1	0	6	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0004	1886	22	5	12	4	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0005	1886	17	15	2	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0006	1886	4	3	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0007	1886	4	0	0	4	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0008	1886	3	0	1	2	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0009	1886	3	3	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0010	1886	2	0	2	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	a0011	1409	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717