JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTN_chr2_178739405_178812423	1/0	a0070	5604	1	0	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0071	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0072	5604	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0073	5604	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0074	5604	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0075	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0076	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0077	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0078	5604	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0079	5604	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0080	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0081	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0082	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0083	5604	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0084	5604	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTPAL_chr20_44470874_44499603	1/1	a0001	342	323	78	68	123	16	36	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	a0002	342	8	8	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	a0003	342	1	1	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	a0004	342	1	0	0	1	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPAL_chr20_44470874_44499603	0/0	a0005	342	1	1	0	0	0	0	copy fasta	TTPAL	chr20	44470874	44499603
TTPA_chr8_63054488_63091053	1/1	a0001	278	427	94	74	197	16	44	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	a0002	278	3	0	0	3	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	a0003	278	1	0	0	1	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTPA_chr8_63054488_63091053	0/0	a0004	278	1	0	0	1	0	0	copy fasta	TTPA	chr8	63054488	63091053
TTR_chr18_31586877_31603821	1/1	a0001	147	398	90	70	190	10	36	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	a0002	147	7	1	4	0	2	0	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	a0003	147	3	0	0	3	0	0	copy fasta	TTR	chr18	31586877	31603821
TTR_chr18_31586877_31603821	0/0	a0004	147	2	1	0	1	0	0	copy fasta	TTR	chr18	31586877	31603821
TTYH1_chr19_54410464_54441904	0/1	a0001	450	325	80	67	121	16	40	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	a0002	450	1	1	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	a0003	450	1	1	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	a0004	450	1	0	1	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	a0005	450	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH2_chr17_74208571_74267020	1/0	a0001	534	182	32	36	87	8	18	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0002	534	42	3	10	13	4	12	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0003	534	34	15	8	2	2	7	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0004	534	19	9	1	3	3	3	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0005	534	16	11	0	5	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0006	534	13	7	3	0	0	3	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/1	a0007	534	10	5	2	1	0	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0008	534	9	0	2	5	1	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0009	534	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0010	534	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0011	534	4	0	0	4	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0012	534	3	3	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0013	534	3	2	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0014	534	2	0	2	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0015	534	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0016	534	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0017	534	1	0	0	0	0	1	copy fasta	TTYH2	chr17	74208571	74267020