JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USF3_chr3_113643385_113701642	0/0	a0001	2244	155	16	30	87	2	20	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0002	2242	67	9	15	33	5	5	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0003	2243	30	0	1	23	1	5	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	1/0	a0004	2245	20	13	1	4	1	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0005	2242	18	10	5	3	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0006	2243	13	12	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/1	a0007	2246	8	0	3	0	1	3	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0008	2245	6	2	2	0	2	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0009	2240	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0010	2243	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0011	2245	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0012	2245	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0013	2244	2	0	0	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0014	2242	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0015	2244	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0016	2239	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0017	2243	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0018	2241	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0019	2242	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0020	2243	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0021	2244	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0022	2245	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0023	2244	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0024	2244	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	a0025	2244	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USH1C_chr11_17488900_17549416	0/0	a0001	899	211	44	39	107	4	17	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0002	899	128	30	22	50	8	18	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0003	899	5	4	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0004	899	3	2	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0005	899	2	1	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0006	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0007	899	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0008	899	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0009	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0010	899	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0011	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0012	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0013	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0014	899	1	0	0	0	0	1	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0015	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	a0016	899	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1G_chr17_74911083_74928255	1/1	a0001	461	399	83	70	181	18	45	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0002	461	13	12	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0003	170	2	0	2	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0004	461	2	0	0	2	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0005	461	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0006	461	1	0	0	0	0	1	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0007	461	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0008	461	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	a0009	461	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255