JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L21_chr4_9257872_9269464	0/0	a0069	530	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0070	530	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0071	530	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0072	227	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	a0073	530	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L25_chr4_9324911_9336503	0/0	a0001	530	10	0	0	10	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0002	469	5	0	0	1	0	4	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0003	97	3	0	0	3	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0004	530	2	1	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0005	530	2	0	0	2	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0006	530	1	1	0	0	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0007	530	1	1	0	0	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0008	51	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0009	530	1	1	0	0	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0010	530	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0011	530	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0012	530	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0013	469	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0014	327	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L25_chr4_9324911_9336503	0/0	a0015	530	1	0	0	1	0	0	copy fasta	USP17L25	chr4	9324911	9336503
USP17L26_chr4_9329658_9341250	0/0	a0001	530	47	4	14	19	3	7	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0002	530	13	2	1	10	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0003	530	6	0	2	2	1	1	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0004	530	5	2	2	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0005	469	3	0	0	3	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0006	6	2	0	0	1	0	1	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0007	65	2	0	1	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0008	530	2	0	0	2	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0009	530	1	1	0	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0010	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0011	530	1	1	0	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0012	530	1	1	0	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0013	530	1	1	0	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0014	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0015	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0016	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0017	468	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0018	530	1	1	0	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0019	530	1	0	1	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0020	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0021	469	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0022	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0023	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0024	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0025	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0026	530	1	0	0	0	0	1	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0027	530	1	1	0	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0028	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0029	530	1	0	0	1	0	0	copy fasta	USP17L26	chr4	9329658	9341250
USP17L26_chr4_9329658_9341250	0/0	a0030	44	1	0	1	0	0	0	copy fasta	USP17L26	chr4	9329658	9341250