Search by Genic region
Multiple Alignments (by aa haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
| Item | Value |
|---|---|
| geneid | 728373 |
| ensemblid | ENSG00000230430.5 |
| hgncid | 44452 |
| symbol | USP17L25 |
| name | ubiquitin specific peptidase 17 like family member 25 |
| refseq_nuc | NM_001242326.1 |
| refseq_prot | NP_001229255.1 |
| ensembl_nuc | ENST00000509271.1 |
| ensembl_prot | ENSP00000422097.1 |
| mane_status | MANE Select |
| chr | chr4 |
| start | 9329911 |
| end | 9331503 |
| strand | + |
| ver | v1.2 |
| region | chr4:9329911-9331503 |
| region5000 | chr4:9324911-9336503 |
| regionname0 | USP17L25_chr4_9329911_9331503 |
| regionname5000 | USP17L25_chr4_9324911_9336503 |
| ahapid | grch38/chm13v2 | alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 530 | 10 | 0 | 0 | 10 | 0 | 0 | 10 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0002 | 0/0 | 469 | 6 | 0 | 0 | 2 | 0 | 4 | 2 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(464): Show |
chr4 | 9324911 | 9336503 |
| a0003 | 0/0 | 97 | 3 | 0 | 0 | 3 | 0 | 0 | 3 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(92): Show |
chr4 | 9324911 | 9336503 |
| a0004 | 0/0 | 530 | 2 | 1 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0005 | 0/0 | 530 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0006 | 0/0 | 530 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0007 | 0/0 | 530 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0008 | 0/0 | 530 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0009 | 0/0 | 469 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(464): Show |
chr4 | 9324911 | 9336503 |
| a0010 | 0/0 | 530 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0011 | 0/0 | 530 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0012 | 0/0 | 530 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0013 | 0/0 | 530 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(525): Show |
chr4 | 9324911 | 9336503 |
| a0014 | 0/0 | 327 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | MEDDS others(322): Show |
chr4 | 9324911 | 9336503 |
| achapid | grch38/chm13v2 | alen | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aseq | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 0/0 | 1590 | 4 | 0 | 0 | 4 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0001c0005 | 0/0 | 1590 | 2 | 0 | 0 | 2 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0001c0015 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0001c0016 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0001c0020 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0001c0021 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0002c0002 | 0/0 | 1590 | 4 | 0 | 0 | 1 | 0 | 3 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0002c0014 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0002c0017 | 0/0 | 1590 | 1 | 0 | 0 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0003c0003 | 0/0 | 1589 | 3 | 0 | 0 | 3 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1584): Show |
chr4 | 9324911 | 9336503 | ||
| a0004c0008 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0004c0009 | 0/0 | 1590 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0005c0004 | 0/0 | 1590 | 2 | 0 | 0 | 2 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0006c0006 | 0/0 | 1590 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0007c0007 | 0/0 | 1590 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0008c0013 | 0/0 | 1590 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0009c0018 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0010c0022 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0011c0019 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0012c0010 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0013c0012 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 | ||
| a0014c0011 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1585): Show |
chr4 | 9324911 | 9336503 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | 0/0 | 1593 | 4 | 0 | 0 | 4 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0001c0005t0001 | 0/0 | 1593 | 2 | 0 | 0 | 2 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0001c0015t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0001c0016t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0001c0020t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0001c0021t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0002c0002t0001 | 0/0 | 1593 | 4 | 0 | 0 | 1 | 0 | 3 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0002c0014t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0002c0017t0001 | 0/0 | 1593 | 1 | 0 | 0 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0003c0003t0001 | 0/0 | 1592 | 3 | 0 | 0 | 3 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1587): Show |
chr4 | 9324911 | 9336503 |
| a0004c0008t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0004c0009t0001 | 0/0 | 1593 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0005c0004t0001 | 0/0 | 1593 | 2 | 0 | 0 | 2 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0006c0006t0001 | 0/0 | 1593 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0007c0007t0001 | 0/0 | 1593 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0008c0013t0001 | 0/0 | 1593 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0009c0018t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0010c0022t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0011c0019t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0012c0010t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0013c0012t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| a0014c0011t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | ATGGA others(1588): Show |
chr4 | 9324911 | 9336503 |
| actghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0000 | 0/0 | 4 | 0 | 0 | 4 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0001c0005t0001g0000 | 0/0 | 2 | 0 | 0 | 2 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0001c0015t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0001c0016t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0001c0020t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0001c0021t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0002c0002t0001g0000 | 0/0 | 4 | 0 | 0 | 1 | 0 | 3 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0002c0014t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0002c0017t0001g0000 | 0/0 | 1 | 0 | 0 | 0 | 0 | 1 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0003c0003t0001g0000 | 0/0 | 3 | 0 | 0 | 3 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0004c0008t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0004c0009t0001g0000 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0005c0004t0001g0000 | 0/0 | 2 | 0 | 0 | 2 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0006c0006t0001g0000 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0007c0007t0001g0000 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0008c0013t0001g0000 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0009c0018t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0010c0022t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0011c0019t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0012c0010t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0013c0012t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| a0014c0011t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG01891 | hp1 | a0006 | c0006 | t0001 | g0000 | AFR | ACB | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG01891 | hp2 | a0004 | c0009 | t0001 | g0000 | AFR | ACB | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG02895 | hp1 | a0007 | c0007 | t0001 | g0000 | AFR | GWD | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG02895 | hp2 | a0008 | c0013 | t0001 | g0000 | AFR | GWD | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG03942 | hp1 | a0002 | c0017 | t0001 | g0000 | SAS | BEB | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG03942 | hp2 | a0002 | c0002 | t0001 | g0000 | SAS | BEB | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG04204 | hp1 | a0002 | c0002 | t0001 | g0000 | SAS | STU | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| HG04204 | hp2 | a0002 | c0002 | t0001 | g0000 | SAS | STU | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18963 | hp1 | a0001 | c0005 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18963 | hp2 | a0001 | c0005 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18965 | hp1 | a0010 | c0022 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18965 | hp2 | a0011 | c0019 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18972 | hp1 | a0003 | c0003 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18972 | hp2 | a0002 | c0014 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18978 | hp1 | a0012 | c0010 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18978 | hp2 | a0001 | c0021 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18985 | hp1 | a0001 | c0001 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18985 | hp2 | a0005 | c0004 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18986 | hp1 | a0001 | c0020 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18986 | hp2 | a0004 | c0008 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18988 | hp1 | a0001 | c0015 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18988 | hp2 | a0001 | c0016 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18989 | hp1 | a0013 | c0012 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18989 | hp2 | a0014 | c0011 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18998 | hp1 | a0001 | c0001 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18998 | hp2 | a0002 | c0002 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA19055 | hp1 | a0001 | c0001 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA19055 | hp2 | a0005 | c0004 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA19062 | hp1 | a0003 | c0003 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA19062 | hp2 | a0001 | c0001 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18955 | hp1 | a0003 | c0003 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| NA18955 | hp2 | a0009 | c0018 | t0001 | g0000 | EAS | JPT | USP17L25_chr4_9324911_9336503 | USP17L25 | chr4 | 9324911 | 9336503 |
| view | chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr4:9329937 | A | T | 2 | a0003 a0010 |
4 | NA18955.hp1 NA18965.hp1 NA18972.hp1 others(1): Show |
missense_variant | MODERATE | c.27A>T | p.Arg9Ser | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 27/1593 | 27/1593 | 9/530 | chr4 | 9329937 | |||
| chr4:9329977 | T | C | 3 | a0004 a0006 a0007 |
4 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(1): Show |
missense_variant | MODERATE | c.67T>C | p.Ser23Pro | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 67/1593 | 67/1593 | 23/530 | chr4 | 9329977 | |||
| chr4:9330066 | T | A | 1 | a0002 | 1 | NA18972.hp2 | stop_gained | HIGH | c.156T>A | p.Cys52* | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 156/1593 | 156/1593 | 52/530 | chr4 | 9330066 | |||
| chr4:9330185 | AC | A | 1 | a0003 | 3 | NA18955.hp1 NA18972.hp1 NA19062.hp1 |
frameshift_variant | HIGH | c.276delC | p.Asn92fs | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 276/1593 | 276/1593 | 92/530 | chr4 | 9330185 | |||
| chr4:9330215 | C | T | 1 | a0008 | 1 | HG02895.hp2 | missense_variant | MODERATE | c.305C>T | p.Pro102Leu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 305/1593 | 305/1593 | 102/530 | chr4 | 9330215 | |||
| chr4:9330311 | G | T | 1 | a0013 | 1 | NA18989.hp1 | missense_variant | MODERATE | c.401G>T | p.Arg134Leu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 401/1593 | 401/1593 | 134/530 | chr4 | 9330311 | |||
| chr4:9330427 | A | G | 1 | a0010 | 1 | NA18965.hp1 | missense_variant | MODERATE | c.517A>G | p.Lys173Glu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 517/1593 | 517/1593 | 173/530 | chr4 | 9330427 | |||
| chr4:9330458 | T | C | 3 | a0005 a0012 a0013 |
4 | NA18978.hp1 NA18985.hp2 NA18989.hp1 others(1): Show |
missense_variant | MODERATE | c.548T>C | p.Val183Ala | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 548/1593 | 548/1593 | 183/530 | chr4 | 9330458 | |||
| chr4:9330520 | C | G | 1 | a0009 | 1 | NA18955.hp2 | missense_variant | MODERATE | c.610C>G | p.Gln204Glu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 610/1593 | 610/1593 | 204/530 | chr4 | 9330520 | |||
| chr4:9330544 | G | C | 2 | a0006 a0007 |
2 | HG01891.hp1 HG02895.hp1 |
missense_variant | MODERATE | c.634G>C | p.Gly212Arg | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 634/1593 | 634/1593 | 212/530 | chr4 | 9330544 | |||
| chr4:9330598 | G | A | 1 | a0002 | 1 | NA18972.hp2 | missense_variant | MODERATE | c.688G>A | p.Ala230Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 688/1593 | 688/1593 | 230/530 | chr4 | 9330598 | |||
| chr4:9330671 | G | C | 1 | a0010 | 1 | NA18965.hp1 | missense_variant | MODERATE | c.761G>C | p.Cys254Ser | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 761/1593 | 761/1593 | 254/530 | chr4 | 9330671 | |||
| chr4:9330839 | C | A | 12 | a0001 a0002 a0003 others(9): Show |
25 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(22): Show |
missense_variant | MODERATE | c.929C>A | p.Pro310Gln | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 929/1593 | 929/1593 | 310/530 | chr4 | 9330839 | |||
| chr4:9330890 | G | A | 1 | a0002 | 1 | NA18972.hp2 | missense_variant | MODERATE | c.980G>A | p.Gly327Glu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 980/1593 | 980/1593 | 327/530 | chr4 | 9330890 | |||
| chr4:9330894 | G | A | 1 | a0014 | 1 | NA18989.hp2 | stop_gained | HIGH | c.984G>A | p.Trp328* | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 984/1593 | 984/1593 | 328/530 | chr4 | 9330894 | |||
| chr4:9330914 | A | G | 1 | a0007 | 1 | HG02895.hp1 | missense_variant | MODERATE | c.1004A>G | p.Tyr335Cys | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1004/1593 | 1004/1593 | 335/530 | chr4 | 9330914 | |||
| chr4:9330979 | T | G | 4 | a0002 a0003 a0010 others(1): Show |
6 | NA18955.hp1 NA18965.hp1 NA18965.hp2 others(3): Show |
missense_variant | MODERATE | c.1069T>G | p.Ser357Ala | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1069/1593 | 1069/1593 | 357/530 | chr4 | 9330979 | |||
| chr4:9331001 | G | C | 3 | a0004 a0006 a0007 |
4 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(1): Show |
missense_variant | MODERATE | c.1091G>C | p.Ser364Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1091/1593 | 1091/1593 | 364/530 | chr4 | 9331001 | |||
| chr4:9331144 | C | T | 2 | a0005 a0013 |
3 | NA18985.hp2 NA18989.hp1 NA19055.hp2 |
missense_variant | MODERATE | c.1234C>T | p.His412Tyr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1234/1593 | 1234/1593 | 412/530 | chr4 | 9331144 | |||
| chr4:9331182 | G | C | 1 | a0010 | 1 | NA18965.hp1 | missense_variant | MODERATE | c.1272G>C | p.Leu424Phe | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1272/1593 | 1272/1593 | 424/530 | chr4 | 9331182 | |||
| chr4:9331200 | G | C | 3 | a0004 a0006 a0007 |
4 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(1): Show |
missense_variant | MODERATE | c.1290G>C | p.Gln430His | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1290/1593 | 1290/1593 | 430/530 | chr4 | 9331200 | |||
| chr4:9331217 | A | G | 1 | a0011 | 1 | NA18965.hp2 | missense_variant | MODERATE | c.1307A>G | p.His436Arg | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1307/1593 | 1307/1593 | 436/530 | chr4 | 9331217 | |||
| chr4:9331276 | G | A | 1 | a0002 | 1 | NA18972.hp2 | missense_variant | MODERATE | c.1366G>A | p.Glu456Lys | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1366/1593 | 1366/1593 | 456/530 | chr4 | 9331276 | |||
| chr4:9331318 | A | T | 2 | a0002 a0009 |
6 | HG03942.hp1 HG03942.hp2 HG04204.hp1 others(3): Show |
stop_gained | HIGH | c.1408A>T | p.Lys470* | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1408/1593 | 1408/1593 | 470/530 | chr4 | 9331318 | |||
| chr4:9331384 | T | A | 12 | a0001 a0002 a0003 others(9): Show |
29 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(26): Show |
missense_variant | MODERATE | c.1474T>A | p.Ser492Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1474/1593 | 1474/1593 | 492/530 | chr4 | 9331384 | |||
| chr4:9331388 | C | A | 1 | a0002 | 1 | HG03942.hp1 | missense_variant | MODERATE | c.1478C>A | p.Thr493Asn | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1478/1593 | 1478/1593 | 493/530 | chr4 | 9331388 | |||
| chr4:9331418 | G | A | 1 | a0008 | 1 | HG02895.hp2 | missense_variant | MODERATE | c.1508G>A | p.Gly503Asp | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1508/1593 | 1508/1593 | 503/530 | chr4 | 9331418 | |||
| chr4:9331441 | A | G | 1 | a0002 | 1 | NA18972.hp2 | missense_variant | MODERATE | c.1531A>G | p.Arg511Gly | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1531/1593 | 1531/1593 | 511/530 | chr4 | 9331441 | |||
| chr4:9331444 | G | A | 1 | a0010 | 1 | NA18965.hp1 | missense_variant | MODERATE | c.1534G>A | p.Ala512Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1534/1593 | 1534/1593 | 512/530 | chr4 | 9331444 |
| view | chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr4:9329985 | C | A | 6 | a0003c0003 a0005c0004 a0008c0013 others(3): Show |
9 | HG02895.hp2 NA18955.hp1 NA18972.hp1 others(6): Show |
synonymous_variant | LOW | c.75C>A | p.Pro25Pro | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 75/1593 | 75/1593 | 25/530 | chr4 | 9329985 | |||
| chr4:9330069 | T | C | 3 | a0001c0001 a0001c0015 a0001c0016 |
6 | NA18985.hp1 NA18988.hp1 NA18988.hp2 others(3): Show |
synonymous_variant | LOW | c.159T>C | p.Asp53Asp | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 159/1593 | 159/1593 | 53/530 | chr4 | 9330069 | |||
| chr4:9330195 | G | A | 3 | a0002c0002 a0002c0017 a0009c0018 |
6 | HG03942.hp1 HG03942.hp2 HG04204.hp1 others(3): Show |
synonymous_variant | LOW | c.285G>A | p.Leu95Leu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 285/1593 | 285/1593 | 95/530 | chr4 | 9330195 | |||
| chr4:9330216 | G | A | 1 | a0010c0022 | 1 | NA18965.hp1 | synonymous_variant | LOW | c.306G>A | p.Pro102Pro | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 306/1593 | 306/1593 | 102/530 | chr4 | 9330216 | |||
| chr4:9330237 | G | C | 1 | a0010c0022 | 1 | NA18965.hp1 | synonymous_variant | LOW | c.327G>C | p.Leu109Leu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 327/1593 | 327/1593 | 109/530 | chr4 | 9330237 | |||
| chr4:9330291 | T | G | 6 | a0002c0002 a0002c0014 a0002c0017 others(3): Show |
9 | HG02895.hp2 HG03942.hp1 HG03942.hp2 others(6): Show |
synonymous_variant | LOW | c.381T>G | p.Thr127Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 381/1593 | 381/1593 | 127/530 | chr4 | 9330291 | |||
| chr4:9330354 | A | T | 4 | a0005c0004 a0012c0010 a0013c0012 others(1): Show |
5 | NA18978.hp1 NA18985.hp2 NA18989.hp1 others(2): Show |
synonymous_variant | LOW | c.444A>T | p.Ala148Ala | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 444/1593 | 444/1593 | 148/530 | chr4 | 9330354 | |||
| chr4:9330459 | A | G | 11 | a0002c0002 a0002c0017 a0004c0008 others(8): Show |
15 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(12): Show |
synonymous_variant | LOW | c.549A>G | p.Val183Val | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 549/1593 | 549/1593 | 183/530 | chr4 | 9330459 | |||
| chr4:9330633 | G | A | 1 | a0010c0022 | 1 | NA18965.hp1 | synonymous_variant | LOW | c.723G>A | p.Val241Val | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 723/1593 | 723/1593 | 241/530 | chr4 | 9330633 | |||
| chr4:9330723 | C | T | 3 | a0005c0004 a0012c0010 a0013c0012 |
4 | NA18978.hp1 NA18985.hp2 NA18989.hp1 others(1): Show |
synonymous_variant | LOW | c.813C>T | p.Thr271Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 813/1593 | 813/1593 | 271/530 | chr4 | 9330723 | |||
| chr4:9330768 | C | G | 1 | a0011c0019 | 1 | NA18965.hp2 | synonymous_variant | LOW | c.858C>G | p.Val286Val | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 858/1593 | 858/1593 | 286/530 | chr4 | 9330768 | |||
| chr4:9330771 | A | C | 1 | a0008c0013 | 1 | HG02895.hp2 | synonymous_variant | LOW | c.861A>C | p.Thr287Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 861/1593 | 861/1593 | 287/530 | chr4 | 9330771 | |||
| chr4:9330855 | C | T | 13 | a0001c0001 a0001c0005 a0002c0014 others(10): Show |
20 | HG01891.hp1 HG01891.hp2 HG02895.hp1 others(17): Show |
synonymous_variant | LOW | c.945C>T | p.Leu315Leu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 945/1593 | 945/1593 | 315/530 | chr4 | 9330855 | |||
| chr4:9330945 | G | A | 1 | a0011c0019 | 1 | NA18965.hp2 | synonymous_variant | LOW | c.1035G>A | p.Gln345Gln | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1035/1593 | 1035/1593 | 345/530 | chr4 | 9330945 | |||
| chr4:9330997 | C | T | 3 | a0002c0002 a0002c0017 a0009c0018 |
6 | HG03942.hp1 HG03942.hp2 HG04204.hp1 others(3): Show |
synonymous_variant | LOW | c.1087C>T | p.Leu363Leu | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1087/1593 | 1087/1593 | 363/530 | chr4 | 9330997 | |||
| chr4:9331053 | C | T | 1 | a0002c0014 | 1 | NA18972.hp2 | synonymous_variant | LOW | c.1143C>T | p.His381His | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1143/1593 | 1143/1593 | 381/530 | chr4 | 9331053 | |||
| chr4:9331075 | A | C | 1 | a0004c0009 | 1 | HG01891.hp2 | synonymous_variant | LOW | c.1165A>C | p.Arg389Arg | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1165/1593 | 1165/1593 | 389/530 | chr4 | 9331075 | |||
| chr4:9331293 | C | A | 1 | a0014c0011 | 1 | NA18989.hp2 | synonymous_variant | LOW | c.1383C>A | p.Pro461Pro | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1383/1593 | 1383/1593 | 461/530 | chr4 | 9331293 | |||
| chr4:9331389 | C | A | 3 | a0001c0015 a0001c0020 a0014c0011 |
3 | NA18986.hp1 NA18988.hp1 NA18989.hp2 |
synonymous_variant | LOW | c.1479C>A | p.Thr493Thr | USP17L25 | ENSG00000230430.5 | transcript | ENST00000509271.1 | protein_coding | 1/1 | 1479/1593 | 1479/1593 | 493/530 | chr4 | 9331389 |
| view | chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|
| view | chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|