JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP17L2_chr8_12131435_12143849	0/0	a0021	530	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	a0022	530	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L30_chr4_9358129_9369721	0/0	a0001	530	121	20	15	64	9	13	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0002	530	90	27	27	21	5	10	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0003	530	45	3	6	29	1	6	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0004	312	12	0	7	5	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0005	312	12	1	0	5	1	5	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0006	530	7	7	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0007	530	4	0	4	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0008	530	4	4	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0009	530	4	1	0	3	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0010	312	4	0	0	4	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0011	530	3	0	2	0	0	1	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0012	530	2	0	0	2	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0013	530	2	0	2	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0014	530	2	0	0	2	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0015	530	2	0	1	0	0	1	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0016	530	2	0	0	2	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0017	530	2	0	2	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0018	312	2	0	0	2	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0019	530	1	0	1	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0020	530	1	1	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0021	530	1	1	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0022	530	1	0	1	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0023	530	1	1	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0024	530	1	0	0	1	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0025	469	1	0	0	1	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0026	530	1	0	0	1	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0027	530	1	1	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L30_chr4_9358129_9369721	0/0	a0028	530	1	1	0	0	0	0	copy fasta	USP17L30	chr4	9358129	9369721
USP17L4_chr8_7332115_7343707	0/0	a0000	0	2	2	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	1/1	a0001	530	285	26	58	155	10	34	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0002	530	19	1	2	16	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0003	530	17	3	0	14	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0004	530	8	0	0	2	0	6	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0005	530	7	1	4	2	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0006	530	6	6	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0007	530	5	5	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0008	530	4	0	0	4	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0009	530	4	0	1	1	0	2	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0010	530	3	2	1	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0011	530	3	3	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0012	530	3	3	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0013	530	3	3	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0014	530	3	0	0	2	0	1	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0015	530	2	2	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0016	530	2	0	0	0	2	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0017	530	2	0	0	0	1	1	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0018	530	2	0	1	0	1	0	copy fasta	USP17L4	chr8	7332115	7343707
USP17L4_chr8_7332115_7343707	0/0	a0019	530	1	1	0	0	0	0	copy fasta	USP17L4	chr8	7332115	7343707