JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
USP48_chr1_21673298_21788149	0/0	a0003	1035	1	1	0	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP49_chr6_41784896_41900375	1/1	a0001	688	373	84	72	158	14	43	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	a0002	688	5	0	0	5	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	a0003	688	3	1	2	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	a0004	688	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	a0005	688	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	a0006	688	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP4_chr3_49272144_49345053	1/1	a0001	963	217	75	58	48	12	22	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	a0002	963	3	3	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	a0003	963	3	1	0	0	2	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	a0004	963	2	0	0	2	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	a0005	963	1	1	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP50_chr15_50495562_50551666	1/1	a0001	334	363	80	66	166	13	36	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0002	316	8	8	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0003	334	5	5	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0004	334	2	2	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0005	334	2	0	0	2	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0006	334	2	0	2	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0007	334	1	1	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	a0008	334	1	0	0	0	1	0	copy fasta	USP50	chr15	50495562	50551666
USP51_chrX_55479616_55494848	1/1	a0001	711	283	76	55	114	9	27	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0002	711	2	0	0	2	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0003	55	1	0	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0004	55	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0005	170	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0006	169	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0007	711	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0008	711	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0009	711	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0010	711	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0011	715	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0012	712	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	a0013	711	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP53_chr4_119207713_119300518	1/1	a0001	1073	258	66	42	108	13	27	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0002	1073	102	16	24	50	3	9	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0003	1073	4	0	0	4	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0004	1073	4	4	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0005	1073	2	0	0	2	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0006	1073	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0007	1073	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0008	1073	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0009	839	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0010	1073	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0011	1073	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0012	1073	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0013	1073	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0014	1073	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	a0015	1073	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP54_chr10_73492538_73596342	1/1	a0001	1684	171	45	16	83	0	25	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	a0002	1684	15	13	2	0	0	0	copy fasta	USP54	chr10	73492538	73596342