JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VAMP2_chr17_8154149_8167948	1/1	a0001	116	414	90	80	188	14	40	copy fasta	VAMP2	chr17	8154149	8167948
VAMP3_chr1_7766296_7786432	1/1	a0001	100	446	96	74	222	16	36	copy fasta	VAMP3	chr1	7766296	7786432
VAMP4_chr1_171695160_171747065	1/1	a0001	141	365	88	52	179	16	28	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	a0002	141	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP5_chr2_85579431_85598406	1/1	a0001	116	433	98	82	189	14	48	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	a0002	116	1	0	0	1	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP7_chrX_155876345_155948769	1/1	a0001	220	184	59	34	73	6	10	copy fasta	VAMP7	chrX	155876345	155948769
VAMP8_chr2_85572586_85587031	1/1	a0001	100	424	92	78	188	14	50	copy fasta	VAMP8	chr2	85572586	85587031
VANGL1_chr1_115636970_115703221	1/0	a0001	524	350	83	47	170	18	31	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/1	a0002	524	42	6	19	12	0	4	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	a0003	524	5	5	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	a0004	524	3	0	0	3	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	a0005	524	2	2	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	a0006	524	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	a0007	524	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL2_chr1_160395564_160433670	1/1	a0001	521	388	94	62	166	16	48	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	a0002	521	2	0	0	2	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VAPA_chr18_9909016_9965021	1/1	a0001	249	384	86	76	168	16	36	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	a0002	249	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPB_chr20_58384229_58456101	1/1	a0001	243	367	90	64	164	10	37	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	a0002	243	2	2	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	a0003	243	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VARS1_chr6_31772518_31800752	0/0	a0001	1264	198	59	44	68	6	21	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/1	a0002	1264	137	16	29	68	11	12	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0003	1264	22	5	7	8	1	1	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0004	1264	12	0	0	12	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0005	1264	10	10	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0006	1264	5	3	1	0	0	1	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0007	1264	4	0	0	3	0	1	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0008	1264	2	0	0	2	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0009	1264	2	0	0	0	0	2	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0010	1264	2	0	0	2	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0011	1264	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0012	1264	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0013	1264	1	1	0	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0014	1264	1	0	1	0	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0015	1264	1	0	0	1	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0016	1264	1	0	0	1	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	a0017	1264	1	0	0	1	0	0	copy fasta	VARS1	chr6	31772518	31800752
VARS2_chr6_30909238_30931459	0/1	a0001	1063	166	22	26	93	7	17	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0002	1063	89	10	22	38	5	14	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0003	1063	81	27	18	30	2	4	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0004	1063	29	8	6	2	4	9	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0005	1063	27	13	4	9	0	1	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0006	1063	6	6	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0007	1063	4	0	0	4	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0008	1063	3	3	0	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0009	1063	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0010	1063	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	a0011	1063	1	0	0	1	0	0	copy fasta	VARS2	chr6	30909238	30931459