JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VWA7_chr6_31760590_31782328	0/0	a0019	872	1	0	1	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0020	891	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0021	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0022	891	1	0	0	1	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0023	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	a0024	891	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA8_chr13_41561835_41966109	1/1	a0001	1905	140	30	26	61	6	15	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0002	1905	45	1	12	19	3	10	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0003	1905	22	5	4	12	0	1	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0004	1905	7	3	1	0	0	3	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0005	1905	7	4	0	2	0	1	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0006	1905	6	3	1	2	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0007	1905	3	2	1	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0008	1905	3	1	0	0	0	2	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0009	1905	3	3	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0010	1905	2	1	0	0	1	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0011	1905	2	2	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0012	223	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0013	1905	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0014	1905	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0015	1905	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0016	1290	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0017	1905	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0018	1905	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0019	1905	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0020	1905	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	a0021	1905	1	0	1	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWC2L_chr2_214406054_214583976	1/1	a0001	222	282	82	60	108	8	22	copy fasta	VWC2L	chr2	214406054	214583976
VWC2_chr7_49768638_49926950	1/0	a0001	325	119	29	25	36	5	23	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/1	a0002	325	106	38	25	19	7	16	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	a0003	325	27	12	1	9	0	5	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	a0004	325	4	1	3	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWCE_chr11_61253286_61300316	1/1	a0001	955	162	72	27	36	10	15	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0002	955	6	0	0	6	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0003	955	6	6	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0004	955	3	0	3	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0005	955	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0006	955	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0007	955	2	0	0	2	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0008	955	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0009	955	1	0	0	1	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0010	955	1	0	1	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0011	955	1	0	0	0	0	1	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0012	955	1	0	1	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0013	955	1	0	0	1	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	a0014	955	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWDE_chr7_12325885_12408865	0/0	a0000	0	1	0	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0001	1590	61	5	13	29	7	7	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0002	384	52	3	4	39	1	5	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0003	1590	47	2	12	33	0	0	copy fasta	VWDE	chr7	12325885	12408865