JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
VWDE_chr7_12325885_12408865	0/0	a0004	1590	27	7	4	13	0	3	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0005	1590	21	3	13	0	2	3	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/1	a0006	1590	14	2	6	0	2	3	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0007	1590	10	10	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0008	384	9	5	0	2	0	2	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0009	1590	9	0	1	7	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0010	1590	8	0	2	4	2	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0011	384	6	6	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0012	1590	6	6	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0013	1590	5	5	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0014	1590	5	4	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0015	1272	5	2	2	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0016	1590	4	0	0	4	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0017	1272	3	2	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0018	1590	3	0	2	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0019	384	3	0	0	3	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0020	1590	3	0	1	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0021	1590	3	0	0	1	1	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0022	1590	3	3	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0023	1590	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0024	1590	2	1	0	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0025	1590	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0026	384	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0027	1272	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0028	1590	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0029	1590	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0030	1590	2	0	0	1	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0031	1590	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0032	1590	2	0	0	0	0	2	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0033	1590	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0034	1590	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0035	1590	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0036	1590	2	0	0	2	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0037	1590	2	0	2	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0038	384	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0039	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0040	1272	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0041	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0042	1590	1	0	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0043	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0044	1590	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0045	1590	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0046	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0047	745	1	0	0	0	0	1	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0048	1590	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0049	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0050	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0051	1590	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0052	1590	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	a0053	1590	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865