JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDHD1_chr14_54933949_55032099	0/0	a0004	1129	5	5	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0005	1129	5	0	4	0	1	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0006	1129	3	0	0	3	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0007	1129	2	2	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0008	1129	2	1	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0009	1129	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0010	1129	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0011	1129	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0012	1129	1	0	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0013	1129	1	0	0	0	0	1	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0014	1129	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0015	1129	1	0	0	0	0	1	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0016	1129	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0017	1129	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0018	1129	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	a0019	1129	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDPCP_chr2_63114559_63593477	1/1	a0001	746	214	65	44	57	14	32	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	a0002	746	1	0	0	1	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	a0003	746	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDR11_chr10_120846362_120914524	1/1	a0001	1224	378	90	71	165	14	36	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0002	1224	2	0	0	0	2	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0003	1224	1	0	1	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0004	1018	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0005	1224	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0006	1224	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0007	1224	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	a0008	1224	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR12_chr2_202869261_202916673	1/1	a0001	423	368	88	71	164	10	33	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	a0002	423	13	0	5	4	4	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	a0003	211	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	a0004	423	1	0	0	0	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	a0005	423	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR13_chrX_48592492_48613869	1/1	a0001	485	299	80	47	133	9	28	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0002	229	3	0	0	3	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0003	78	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0004	80	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0005	312	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0006	428	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0007	353	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0008	313	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0009	287	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	a0010	122	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR17_chr4_176060841_176187815	0/0	a0001	1283	141	28	22	71	2	18	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0002	1283	84	21	13	42	4	4	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/1	a0003	1283	44	3	9	23	1	7	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0004	1283	24	5	3	13	2	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0005	1283	12	3	3	2	1	3	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0006	1283	7	7	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0007	1283	6	4	2	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0008	1283	6	0	1	0	1	4	copy fasta	WDR17	chr4	176060841	176187815