JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WDR17_chr4_176060841_176187815	0/0	a0009	1283	6	6	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0010	1283	5	0	0	5	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0011	1283	4	0	1	3	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	1/0	a0012	1283	2	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0013	1283	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0014	1283	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0015	1283	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0016	1283	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0017	1283	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0018	1283	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0019	1283	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0020	1283	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0021	1283	1	0	0	0	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0022	1283	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0023	1283	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0024	1283	1	0	0	0	1	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0025	1283	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0026	1283	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	a0027	1283	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR18_chr19_979345_999557	0/1	a0001	432	313	86	63	115	15	33	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	1/0	a0002	432	62	0	17	42	0	2	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	a0003	432	45	2	0	37	0	6	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	a0004	432	26	0	2	15	3	6	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	a0005	432	7	7	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	a0006	432	1	0	0	1	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	a0007	432	1	1	0	0	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	a0008	432	1	0	0	0	0	1	copy fasta	WDR18	chr19	979345	999557
WDR19_chr4_39177529_39290810	1/1	a0001	1342	250	53	47	115	8	25	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0002	1342	14	13	1	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0003	1342	10	3	3	2	0	2	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0004	1342	5	0	0	5	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0005	1342	5	5	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0006	1342	2	0	0	2	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0007	1342	1	0	0	0	0	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0008	1342	1	0	0	0	0	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0009	1342	1	0	1	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0010	1342	1	0	0	1	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0011	1342	1	0	0	1	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0012	1342	1	0	0	0	0	1	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0013	1342	1	1	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	a0014	1342	1	1	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR1_chr4_10069339_10121799	0/1	a0001	606	232	39	47	108	12	25	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	1/0	a0002	606	180	58	27	68	6	20	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	a0003	606	1	1	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	a0004	606	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR20_chr14_102134897_102215527	1/1	a0001	569	259	89	54	80	8	26	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	a0002	569	2	0	0	2	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	a0003	569	1	0	0	1	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	a0004	569	1	1	0	0	0	0	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	a0005	569	1	0	0	1	0	0	copy fasta	WDR20	chr14	102134897	102215527