JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WNT10B_chr12_48960340_48976735	1/1	a0001	389	379	92	72	159	16	38	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	a0002	389	2	0	2	0	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	a0003	389	1	0	0	1	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT11_chr11_76181325_76211502	1/1	a0001	354	423	88	82	187	18	46	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	a0002	354	5	5	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	a0003	354	2	0	0	2	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	a0004	354	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	a0005	354	1	0	0	1	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT16_chr7_121324000_121346104	1/1	a0001	365	229	9	43	150	6	19	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	a0002	365	173	76	35	36	7	19	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	a0003	365	3	3	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	a0004	365	2	2	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	a0005	24	1	0	0	0	1	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	a0006	365	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	a0007	365	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT1_chr12_48973322_48987620	1/1	a0001	370	393	91	74	169	15	42	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	a0002	370	1	0	0	0	1	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	a0003	370	1	0	0	1	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	a0004	370	1	1	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT2B_chr1_112503965_112535165	1/1	a0001	391	400	93	72	184	16	33	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	a0002	391	2	0	0	2	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	a0003	391	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	a0004	391	1	0	0	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2_chr7_117270451_117328058	1/1	a0001	360	313	76	58	127	12	38	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	a0002	360	2	2	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	a0003	360	1	0	0	1	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT3A_chr1_228001998_228066271	1/1	a0001	352	375	83	62	170	14	44	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	a0002	352	5	5	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	a0003	352	1	0	1	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	a0004	352	1	0	1	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3_chr17_46757506_46823692	0/1	a0001	355	280	82	68	86	16	27	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	a0002	355	1	0	0	0	0	1	copy fasta	WNT3	chr17	46757506	46823692
WNT4_chr1_22112313_22148097	1/1	a0001	351	384	82	75	167	14	44	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	a0002	351	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	a0003	351	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT5A_chr3_55460715_55492306	1/1	a0001	380	366	94	78	132	16	44	copy fasta	WNT5A	chr3	55460715	55492306
WNT5B_chr12_1624231_1652212	1/1	a0001	359	449	96	84	203	14	50	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	a0002	359	1	0	0	1	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT6_chr2_218854805_218879233	1/1	a0001	365	350	88	64	151	7	38	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	a0002	365	4	1	2	0	1	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	a0003	365	3	3	0	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	a0004	365	1	0	0	1	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT7A_chr3_13811258_13885071	1/1	a0001	349	353	87	74	142	12	36	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	a0002	349	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7B_chr22_45915366_45982162	1/1	a0001	349	348	90	70	122	18	46	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	a0002	349	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	a0003	146	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT8A_chr5_138079033_138096541	1/1	a0001	369	396	93	75	170	14	42	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	a0002	369	2	0	2	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	a0003	369	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541