JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WRNIP1_chr6_2760393_2791952	0/0	a0007	665	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	a0008	665	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRN_chr8_31028810_31181138	0/0	a0001	1432	86	24	14	41	1	6	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	1/0	a0002	1432	79	30	5	26	5	12	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/1	a0003	1432	41	6	10	12	4	8	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0004	1432	12	0	8	0	0	4	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0005	1432	11	4	1	2	2	2	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0006	1432	10	7	1	0	2	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0007	1432	7	7	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0008	1432	6	6	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0009	1432	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0010	1432	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0011	1432	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0012	1432	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0013	1432	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0014	1432	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0015	1432	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0016	1432	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0017	1432	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0018	1432	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	a0019	1432	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WSB1_chr17_27289114_27320926	1/0	a0001	421	179	34	45	80	6	13	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/1	a0002	421	154	56	28	42	6	21	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	a0003	421	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	a0004	421	1	0	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	a0005	421	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB2_chr12_118027687_118066179	1/1	a0001	404	402	91	70	180	15	44	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	a0002	404	6	6	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	a0003	404	1	0	0	0	1	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	a0004	404	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSCD1_chr17_6065379_6129427	1/1	a0001	575	407	81	74	189	15	46	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0002	575	8	4	2	0	0	2	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0003	575	6	6	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0004	575	2	2	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0005	575	2	2	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0006	575	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0007	575	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0008	575	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0009	575	1	0	0	0	1	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	a0010	575	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD2_chr12_108124288_108255537	1/0	a0001	565	229	84	50	56	13	25	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/1	a0002	565	47	2	11	25	1	7	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	a0003	565	4	4	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	a0004	565	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	a0005	565	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	a0006	565	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	a0007	565	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WT1_chr11_32382775_32440539	1/1	a0001	449	328	86	62	126	4	48	copy fasta	WT1	chr11	32382775	32440539
WTAP_chr6_159722506_159761319	1/1	a0001	396	394	96	75	167	16	38	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	a0002	396	1	0	1	0	0	0	copy fasta	WTAP	chr6	159722506	159761319