JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZBTB3_chr11_62745963_62759160	0/0	a0003	524	3	3	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	a0004	524	2	2	0	0	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB3_chr11_62745963_62759160	0/0	a0005	524	1	0	0	1	0	0	copy fasta	ZBTB3	chr11	62745963	62759160
ZBTB40_chr1_22446851_22536154	0/0	a0001	1239	269	58	52	127	6	26	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/1	a0002	1239	49	10	13	16	2	7	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0003	1239	13	11	2	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0004	1239	3	0	0	3	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0005	1239	2	0	1	0	0	1	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0006	1239	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0007	1239	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0008	1239	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	1/0	a0009	1239	1	0	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0010	1239	1	0	0	1	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB40_chr1_22446851_22536154	0/0	a0011	1239	1	1	0	0	0	0	copy fasta	ZBTB40	chr1	22446851	22536154
ZBTB41_chr1_197148682_197206293	1/1	a0001	909	300	65	56	134	10	33	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	a0002	909	24	18	0	6	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	a0003	909	2	2	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	a0004	909	1	0	0	0	0	1	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB41_chr1_197148682_197206293	0/0	a0005	909	1	1	0	0	0	0	copy fasta	ZBTB41	chr1	197148682	197206293
ZBTB42_chr14_104796101_104809712	1/0	a0001	422	75	11	8	47	0	8	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	a0002	422	23	4	4	15	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB42_chr14_104796101_104809712	0/0	a0003	422	1	1	0	0	0	0	copy fasta	ZBTB42	chr14	104796101	104809712
ZBTB43_chr9_126800040_126843210	1/1	a0001	467	386	91	72	160	18	43	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	a0002	467	1	0	0	0	0	1	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	a0003	467	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB44_chr11_130221677_130319917	1/0	a0001	570	276	74	48	133	4	16	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	a0002	570	12	10	2	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/1	a0003	570	1	0	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	a0004	570	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB45_chr19_58508530_58524810	1/1	a0001	511	390	83	73	176	16	40	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0002	511	6	1	3	0	2	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0003	511	5	5	0	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0004	511	2	0	2	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0005	511	2	0	0	2	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0006	511	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0007	511	1	1	0	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0008	511	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0009	511	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	a0010	511	1	0	0	1	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB46_chr20_63738670_63836264	1/0	a0001	589	232	65	62	65	12	27	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/1	a0002	589	82	23	7	38	2	11	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	a0003	589	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	a0004	589	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB47_chr3_42648697_42672580	1/1	a0001	747	384	81	76	171	16	38	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	a0002	747	6	6	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	a0003	747	4	4	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	a0004	747	1	0	0	1	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	a0005	747	1	1	0	0	0	0	copy fasta	ZBTB47	chr3	42648697	42672580
ZBTB48_chr1_6574994_6594280	1/1	a0001	688	395	92	78	169	12	42	copy fasta	ZBTB48	chr1	6574994	6594280
ZBTB48_chr1_6574994_6594280	0/0	a0002	688	10	0	3	0	2	5	copy fasta	ZBTB48	chr1	6574994	6594280