JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZCCHC4_chr4_25307774_25375383	0/0	a0010	513	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0011	513	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0012	513	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC4_chr4_25307774_25375383	0/0	a0013	513	1	1	0	0	0	0	copy fasta	ZCCHC4	chr4	25307774	25375383
ZCCHC7_chr9_37115574_37363149	1/1	a0001	543	257	57	51	104	10	33	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	a0002	543	19	17	1	0	0	1	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	a0003	543	2	0	0	0	0	2	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	a0004	543	1	0	0	1	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	a0005	543	1	1	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	a0006	543	1	0	0	1	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	a0007	543	1	1	0	0	0	0	copy fasta	ZCCHC7	chr9	37115574	37363149
ZCCHC8_chr12_122466600_122505932	1/1	a0001	707	364	77	74	153	18	40	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	a0002	707	3	2	0	1	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	a0003	707	1	1	0	0	0	0	copy fasta	ZCCHC8	chr12	122466600	122505932
ZCCHC9_chr5_81296587_81318297	1/0	a0001	271	342	81	57	145	15	43	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/1	a0002	271	17	7	5	0	3	1	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	a0003	271	2	2	0	0	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCCHC9_chr5_81296587_81318297	0/0	a0004	271	1	0	0	1	0	0	copy fasta	ZCCHC9	chr5	81296587	81318297
ZCRB1_chr12_42307086_42331094	1/1	a0001	217	394	89	74	177	12	40	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	a0002	217	1	1	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	a0003	217	1	0	0	0	0	1	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	a0004	217	1	0	0	1	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	a0005	217	1	0	0	0	0	1	copy fasta	ZCRB1	chr12	42307086	42331094
ZCWPW1_chr7_100395872_100433703	1/1	a0001	649	282	68	49	106	13	44	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0002	649	13	13	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0003	649	5	0	0	5	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0004	649	4	1	2	0	1	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0005	649	3	3	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0006	649	2	0	1	0	1	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0007	649	2	0	0	2	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0008	649	2	0	0	0	0	2	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0009	649	1	0	1	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0010	649	1	0	0	1	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0011	649	1	0	1	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0012	649	1	1	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	a0013	649	1	0	0	0	1	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW2_chr3_28343721_28531358	1/0	a0001	356	142	41	30	50	4	16	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/1	a0002	356	110	21	29	44	5	10	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	a0003	356	2	0	1	0	1	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZDBF2_chr2_206269663_206319427	1/1	a0001	2354	182	37	27	87	8	21	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0002	2354	121	28	28	42	7	16	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0003	2354	7	0	4	3	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0004	2354	7	0	0	7	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0005	2354	6	6	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0006	2354	4	3	1	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0007	2354	2	2	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0008	2354	2	0	1	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0009	2354	2	0	2	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0010	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0011	2354	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427