JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZDBF2_chr2_206269663_206319427	0/0	a0012	2354	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0013	1678	1	0	1	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0014	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0015	2354	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0016	2354	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0017	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0018	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0019	2354	1	0	0	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0020	2354	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0021	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0022	2354	1	0	0	0	0	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0023	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0024	2354	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0025	2354	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	a0026	2354	1	0	0	0	1	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDHHC11B_chr5_705355_789729	0/0	a0001	12	214	62	44	84	7	17	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	1/0	a0002	371	16	0	7	2	3	3	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0003	371	9	0	0	8	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0004	371	5	4	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0005	371	4	4	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0006	371	4	1	1	1	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0007	371	3	0	0	3	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0008	371	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0009	371	2	0	2	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0010	371	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0011	371	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0012	371	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0013	371	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0014	371	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0015	371	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0016	371	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0017	371	1	0	0	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0018	371	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0019	371	1	0	0	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0020	371	1	0	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	a0021	3	1	1	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11_chr5_790605_855986	1/1	a0001	412	144	16	33	66	13	14	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0002	412	62	17	17	22	1	5	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0003	412	42	10	1	30	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0004	412	14	0	1	12	0	1	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0005	412	7	7	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0006	412	7	7	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0007	412	5	5	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0008	412	5	4	1	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0009	412	4	4	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0010	412	2	2	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0011	412	2	2	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0012	412	2	2	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0013	412	1	0	0	1	0	0	copy fasta	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	a0014	412	1	1	0	0	0	0	copy fasta	ZDHHC11	chr5	790605	855986