JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF135_chr19_58054282_58074755	1/0	a0002	658	96	4	11	71	0	9	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0003	658	3	3	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0004	1	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0005	658	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0006	658	2	0	0	2	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0007	658	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0008	658	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0009	658	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0010	658	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0011	658	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0012	521	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0013	658	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0014	658	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0015	658	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0016	658	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0017	658	1	0	0	1	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0018	658	1	0	0	1	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	a0019	658	1	0	0	0	1	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF136_chr19_12158096_12194871	1/1	a0001	540	365	91	62	150	16	44	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	a0002	540	1	1	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF138_chr7_64789428_64838680	0/0	a0001	319	206	74	30	70	11	21	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/1	a0002	319	166	16	33	92	7	17	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	a0003	319	53	1	13	38	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	1/0	a0004	319	6	5	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	a0005	319	1	0	0	0	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF140_chr12_133075923_133112428	1/1	a0001	457	322	90	70	94	18	48	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	a0002	457	54	1	2	51	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	a0003	457	14	0	10	4	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	a0004	457	1	1	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	a0005	457	1	0	0	1	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF141_chr4_332814_389868	1/1	a0001	474	314	82	48	130	16	36	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0002	474	14	14	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0003	474	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0004	474	2	1	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0005	474	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0006	474	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0007	455	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0008	474	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	a0009	474	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF142_chr2_218628329_218664623	0/1	a0001	1887	126	5	34	68	6	12	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0002	1887	63	2	22	18	7	14	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0003	1887	50	14	1	32	0	3	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0004	1887	40	39	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	1/0	a0005	1887	19	17	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0006	1887	9	9	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0007	1887	5	5	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0008	1887	4	0	0	4	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0009	1887	2	2	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0010	1887	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	a0011	1887	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623