JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF256_chr19_57935833_57952706	0/0	a0004	459	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	a0005	627	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	a0006	627	1	0	1	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	a0007	627	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	a0008	627	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF257_chr19_22047484_22096480	1/1	a0001	563	352	70	53	181	10	36	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0002	563	10	10	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0003	563	5	0	3	0	2	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0004	563	3	1	2	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0005	563	3	3	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0006	563	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0007	563	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0008	563	1	0	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0009	563	1	0	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	a0010	563	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF25_chr10_37944573_37981647	1/1	a0001	456	386	93	68	171	12	40	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	a0002	456	8	1	5	0	2	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	a0003	456	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	a0004	456	1	0	0	1	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	a0005	456	1	1	0	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	a0006	456	1	0	1	0	0	0	copy fasta	ZNF25	chr10	37944573	37981647
ZNF260_chr19_36505687_36533271	1/1	a0001	412	355	89	72	138	13	41	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	a0002	412	20	0	0	18	1	1	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	a0003	412	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF263_chr16_3278491_3296460	1/1	a0001	683	279	39	51	145	11	31	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0002	683	85	54	18	7	3	3	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0003	683	3	2	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0004	683	2	0	0	2	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0005	683	2	2	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0006	683	2	0	0	2	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0007	683	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0008	683	1	0	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0009	683	1	0	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0010	683	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	a0011	683	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF264_chr19_57186500_57227846	0/1	a0001	627	206	70	39	64	9	23	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	1/0	a0002	627	132	14	30	65	5	17	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0003	627	10	9	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0004	627	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0005	627	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0006	627	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0007	627	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0008	627	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0009	627	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	a0010	627	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF266_chr19_9407429_9440573	1/1	a0001	616	388	96	74	154	18	44	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	a0002	616	6	0	0	6	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	a0003	616	5	4	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	a0004	616	1	0	0	1	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	a0005	616	1	0	0	1	0	0	copy fasta	ZNF266	chr19	9407429	9440573