Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF695_chr1_246980323_247013057	0/0	a0008	515	11	2	0	6	1	2	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0009	515	7	5	1	0	1	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0010	515	6	6	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0011	515	4	2	1	0	1	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/1	a0012	515	2	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0013	515	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0014	515	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0015	515	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0016	515	1	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF696_chr8_143286417_143304952	1/1	a0001	374	426	93	79	191	15	46	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	a0002	374	3	3	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	a0003	126	1	0	0	0	1	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	a0004	374	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	a0005	374	1	0	1	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	a0006	374	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	a0007	374	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF697_chr1_119614377_119653266	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	1/1	a0001	545	353	80	70	141	15	45	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0002	433	17	6	2	6	1	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0003	433	9	3	1	5	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0004	545	6	0	0	6	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0005	545	2	0	0	0	2	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0006	30	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0007	554	1	0	1	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0008	545	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0009	545	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0010	545	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	a0011	433	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF699_chr19_9286140_9314838	1/1	a0001	642	386	93	64	171	18	38	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	a0002	642	3	3	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	a0003	642	2	2	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	a0004	642	2	2	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	a0005	642	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF69_chr19_11882782_11911696	1/1	a0001	566	382	92	69	171	12	36	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	a0002	566	4	0	1	3	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	a0003	566	3	3	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	a0004	566	2	0	0	0	0	2	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	a0005	566	1	0	0	1	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	a0006	566	1	1	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	a0007	566	1	0	0	1	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF700_chr19_11920107_11955763	1/1	a0001	742	263	49	50	117	13	32	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0002	742	38	23	5	7	1	2	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0003	742	15	11	3	0	0	1	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0004	742	9	9	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0005	742	8	0	6	0	0	2	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0006	742	6	0	4	2	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0007	770	3	0	3	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0008	742	2	2	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0009	742	1	0	0	1	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	a0010	742	1	0	0	0	0	1	copy fasta	ZNF700	chr19	11920107	11955763